bio-miga/miga

`miga get` conflict between `--file` and `--db`

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When passing a --file, the default database (nuccore) is kept regardless of the --db value. A workaround is to include a db column in the file, but this should be resolved.

In fact, all parameters are currently being ignored if --file is passed, it's not specific to --db. This is unexpected behaviour and should be corrected.