bio-miga/miga

Issues

• miga init error, Failed to install pyhmerr

  #180 opened 6 months ago by tryfon
  1

• Web server results download

  #175 opened 7 months ago by ranitori
  2

• gzip -> pigz

  #169 opened 7 months ago by lmrodriguezr
  1

• Error when uploading Genome on NCBI Prok

  #177 opened 7 months ago by aaronlohar
  1

• Allow for query distances to run against empty projects

  #176 opened 8 months ago by lmrodriguezr
  0

• `miga get` conflict between `--file` and `--db`

  #154 opened 9 months ago by lmrodriguezr
  1

• ruby: not found

  #168 opened 2 years ago by gwL955
  5

• fail to run in the colab

  #171 opened a year ago by Yun-Tianming
  3

• Fix code scanning alert - Polynomial regular expression used on uncontrolled data

  #174 opened a year ago by lmrodriguezr
  0

• Fix code scanning alert - Polynomial regular expression used on uncontrolled data

  #173 opened a year ago by lmrodriguezr
  0

• new miga version not working for conda env

  #170 opened a year ago by jianshu93
  2

• Add database information to `taxonomy` step

  #152 opened 2 years ago by lmrodriguezr
  0

• Create database

  #167 opened 2 years ago by gwL955
  6

• Add `clean_distances!` to the end of `distances` step

  #166 opened 2 years ago by lmrodriguezr
  0

• Low-identity FastAAI values resulting in AAI = 0

  #165 opened 2 years ago by lmrodriguezr
  0

• Add citations to each step in the manual

  #163 opened 2 years ago by lmrodriguezr
  0

• Quality (essential genes) only reporting for 23 essential genes

  #160 opened 2 years ago by kkowalden
  1

• miga quality_wf and derep_wf not working for archaea genomes

  #157 opened 2 years ago by jianshu93
  1

• Allow pre-classification with other databases

  #162 opened 2 years ago by lmrodriguezr
  0

• Quality categories not in line with community standards

  #161 opened 2 years ago by lmrodriguezr
  0

• MyTaxa Scan cannot be requested for query datasets

  #159 opened 2 years ago by lmrodriguezr
  0

• NCBI Prok Project not available

  #158 opened 2 years ago by schoolprojectshere
  0

• Implement FastAAI crystals

  #155 opened 2 years ago by lmrodriguezr
  0

• Get data/metadata from SeqCode

  #149 opened 2 years ago by lmrodriguezr
  0

• Test coverage for SeqCode Registry remote access

  #153 opened 2 years ago by lmrodriguezr
  0

• Misleading error on get_db with --reuse-archive option

  #151 opened 2 years ago by romangr
  0

• Report all rRNAs

  #145 opened 2 years ago by lmrodriguezr
  0

• Incorporate tRNA scanning

  #150 opened 2 years ago by lmrodriguezr
  0

• Download data/metadata from GTDB

  #144 opened 2 years ago by lmrodriguezr
  0

• Test coverage for GTDB remote access

  #148 opened 2 years ago by lmrodriguezr
  0

• Get GTDB type designation

  #147 opened 2 years ago by lmrodriguezr
  0

• FastQ offset

  #146 opened 2 years ago by lmrodriguezr
  0

• slow mode dereplicate v0.7 (blastp, blastn) runtime error for large genome collection (~4000)

  #115 opened 2 years ago by jianshu93
  1

• `miga get_db` should unarchive to a temporary folder and then replace the database

  #142 opened 3 years ago by lmrodriguezr
  1

• Logs should report software versions used

  #143 opened 2 years ago by lmrodriguezr
  0

• `seqtk` missing from the `apt-get` manual

  #137 opened 3 years ago by lmrodriguezr
  0

• Can not open the webpage of MiGA Online

  #133 opened 2 years ago by Yu-Tzu
  0

• Implement `cleanup` action

  #141 opened 3 years ago by lmrodriguezr
  0

• Added query dataset is displayed as reference

  #140 opened 3 years ago by romangr
  1

• Bring back Ruby 3.0 tests

  #139 opened 3 years ago by lmrodriguezr
  0

• Add daemon settings to launch project-wide jobs

  #132 opened 3 years ago by lmrodriguezr
  0

• FastAAI new version to MiGA

  #135 opened 3 years ago by lmrodriguezr
  0

• Homebrew: adoptopenjdk -> temurin

  #136 opened 3 years ago by lmrodriguezr
  0

• Add ANI to `taxonomy`

  #134 opened 4 years ago by lmrodriguezr
  0

• Wrong colab notebook for Brew

  #131 opened 4 years ago by lmrodriguezr
  0

• medoids tree takes too long

  #130 opened 4 years ago by lmrodriguezr
  0

• Scythe no longer in conda

  #125 opened 4 years ago by lmrodriguezr
  10

• Part of MiGA is not working (aai and ani)

  #124 opened 4 years ago by BJCampbelllab
  5

• Project-wide results should update automatically

  #116 opened 4 years ago by lmrodriguezr
  0

• Bidirectional comparisons not being saved

  #114 opened 4 years ago by lmrodriguezr
  0