miga quality_wf and derep_wf not working for archaea genomes

[jianshu93]

Hello Miguel,

I uploaded a archaea genome for testing purposes, which is an isolate archaea from Asgard phylum. It should be 100% complete.

I attached results from quality_wf and checkm:

completeness 28.8
contamination 1.8
quality 19.8

Bin Id Marker lineage # genomes # markers # marker sets 0 5+ Completeness Contamination Strain heterogeneity
Prometheoarchaeum_syntrophicum k__Archaea (UID2) 207 149 107 11 131 5 2 0 0 91.74 6.07 9.09

Prometheoarchaeum_syntrophicum.fasta.zip

Hope this can be fixed soon!

Many Thanks,

Jianshu

[jianshu93]

I am actually thinking on solution similar to that of checkm，using phylogenetic replacement to determine whether it is bacteria or archaea.

Thanks，

Jianshu