Bio2BEL
Enabling Biological Expression Language to act as a semantic integration layer for multi-modal and multi-scale data sets in the life sciences
Pinned Repositories
bio2bel
A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
doid
A Bio2BEL package for the Disease Ontology (http://www.disease-ontology.org)
drugbank
A Bio2BEL package for DrugBank (https://www.drugbank.ca)
hmdb
A Bio2BEL package for converting the Human Metabolite Database (HMDB) to BEL
kegg
A Bio2BEL package for integrating pathway-related information from KEGG in BEL
mesh
A Bio2BEL package for the Medical Subject Headings (MeSH; https://meshb.nlm.nih.gov)
phosphosite
pubchem
NCBI PubChem to BEL
reactome
Integration of pathway-related information from Reactome in BEL
wikipathways
Integration of pathway-related information from WikiPathways in BEL
Bio2BEL's Repositories
bio2bel/hmdb
A Bio2BEL package for converting the Human Metabolite Database (HMDB) to BEL
bio2bel/pubchem
NCBI PubChem to BEL
bio2bel/doid
A Bio2BEL package for the Disease Ontology (http://www.disease-ontology.org)
bio2bel/mesh
A Bio2BEL package for the Medical Subject Headings (MeSH; https://meshb.nlm.nih.gov)
bio2bel/bio2bel-notebooks
Notebooks demonstrating the usage of Bio2BEL packages
bio2bel/ctd
A Bio2BEL package for converting the Comparative Toxicogenomics Database (CTD) to BEL
bio2bel/ddr
Disease-disease relationships from Menche et al.
bio2bel/adeptus
Convert differential gene expression signatures for diseases from ADEPTUS to BEL
bio2bel/mir2disease
A Bio2BEL package for mir2disease (http://www.mir2disease.org)
bio2bel/chembl
A Bio2BEL package for converting biochemical inhibition and binding information in ChEMBL to BEL
bio2bel/interpro
A Bio2BEL package for converting InterPro to BEL
bio2bel/antibodyregistry
bio2bel/bio2bel-art
Artwork for bio2bel
bio2bel/bio2bel-manuscript-supplement
Supplementary information for the Bio2BEL (2019) manuscript
bio2bel/bkms
A Bio2BEL package for converting BMKS-react to BEL
bio2bel/cmo
Convert the Clinical Measurement Ontology to BEL
bio2bel/complexportal
Nomenclature and definitions of protein complexes in BEL
bio2bel/efo
Experimental Factor Ontology (EFO) to BEL
bio2bel/excape
Convert curated assays from ExCAPE-DB to BEL
bio2bel/gfam
[DEPRECATED] HGNC Gene Families to BEL
bio2bel/hmdd
A Bio2BEL package for converting the Human microRNA Disease Database (HMDD) to BEL
bio2bel/homologene
bio2bel/hp
A Bio2BEL package for converting the Human Phenotype Ontology (HP) to BEL
bio2bel/mirenvironment
miREnvironment to BEL
bio2bel/mirwalk
miRWalk to BEL
bio2bel/ncbitaxon
NCBI Taxonomy Tree
bio2bel/nextprot
bio2bel/phenomir
phenomir to BEL
bio2bel/scai-mirna-corpra
SCAI miRNA text mining corpra to BEL
bio2bel/uberon
Uber Anatomy Ontology (UBERON) to BEL