Pinned Repositories
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scripts
00_Pangenome_Analysis
Pangenome Analysis Workflow with Prodigal and CD-HIT
12-trees
Variants analysis
A188Ref1
the process to build the first A188 reference genome
Ab10-Assembly
B73Ab10 genome assembly methods
adapt_PurgeHaplotigs_for_FALCONPhase
Convert output of purge haplotigs to format compatible with FALCON-Phase
adaptiPhy
This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral"
admixturePipeline
A pipeline that accepts a VCF file to run through Admixture
HiC_tools
A collection of tools for Hi-C data analysis
maf2synteny
A tool for recovering synteny blocks from multiple alignment
bioCKO's Repositories
bioCKO/adaptiPhy
This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral"
bioCKO/admixturePipeline
A pipeline that accepts a VCF file to run through Admixture
bioCKO/asynt
Genome alignment and synteny plots
bioCKO/ATAC-seq
bioCKO/Bioinformatics_softwares
bioCKO/Coimbra-et-al-2021_CurrBiol
Code used to analyse WGS data of giraffe in Coimbra et al. 2021 (https://doi.org/10.1016/j.cub.2021.04.033)
bioCKO/CS-Books
🔥🔥超过1000本的计算机经典书籍、个人笔记资料以及本人在各平台发表文章中所涉及的资源等。书籍资源包括C/C++、Java、Python、Go语言、数据结构与算法、操作系统、后端架构、计算机系统知识、数据库、计算机网络、设计模式、前端、汇编以及校招社招各种面经~
bioCKO/duck_comp_gen
Comparative genomics of obligate brood parasite and closely related species in Anatidae
bioCKO/evo
A loose set of tools for (mainly evolutionary) genomics
bioCKO/fusion_twas
methods for functional summary-based imputation
bioCKO/GALA
Long-reads Gap-free Chromosome-scale Assembler
bioCKO/Genomics--butterfly
Scripts behind published genomics analysis
bioCKO/genomics_general
General tools for genomic analyses.
bioCKO/GriffinDetector
To find fusion genes by protein sequences at genome level from several closely related species
bioCKO/HalictidCompGen--compare-genomics
bioCKO/hcontortus_genome
Project area for Haemonchus contortus work
bioCKO/muntjac_code
bioCKO/Populus-Genomic-Consequences-of-Hybridization
bioCKO/PSASS
Pooled Sequencing Analysis for Sex Signal
bioCKO/R-script
bioCKO/RNA-combine
RNA-seq data comprehensive data analysis toolbox
bioCKO/SATC
Sex assignment through coverage
bioCKO/sexdelim
delimit sex-linked regions in chromosome-scale genome assemblies
bioCKO/SLAG-1.0
bioCKO/SUNK-based-contig-scaffolding
bioCKO/SURVIVOR
Toolset for SV simulation, comparison and filtering
bioCKO/TOGA
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
bioCKO/tutorials-1
Tutorials on evolutionary genomics
bioCKO/VIRTUS2
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
bioCKO/worm-code