Pinned Repositories
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scripts
00_Pangenome_Analysis
Pangenome Analysis Workflow with Prodigal and CD-HIT
12-trees
Variants analysis
A188Ref1
the process to build the first A188 reference genome
Ab10-Assembly
B73Ab10 genome assembly methods
adapt_PurgeHaplotigs_for_FALCONPhase
Convert output of purge haplotigs to format compatible with FALCON-Phase
adaptiPhy
This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral"
admixturePipeline
A pipeline that accepts a VCF file to run through Admixture
HiC_tools
A collection of tools for Hi-C data analysis
maf2synteny
A tool for recovering synteny blocks from multiple alignment
bioCKO's Repositories
bioCKO/papers
bioCKO/DendroPy
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
bioCKO/heliconius_genome_scaffolding_scripts
bioCKO/mcscan
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format