Issues
- 0
add bargraph alternative to heatmap
#305 opened by amnona - 0
join_experiments() raises as pandas future warning
#303 opened by amnona - 0
add documentation for new functions/modules
#301 opened by amnona - 0
Add permanova support
#300 opened by amnona - 0
command history for save and load
#299 opened by amnona - 1
update installation instructions
#292 opened by amnona - 0
No documentation for new version?
#294 opened by DrJStrudwick - 0
New versions not on pypi?
#293 opened by DrJStrudwick - 0
working with small/negative values
#291 opened by amnona - 0
- 0
use pandas data frame as metadata input
#288 opened by baobabprince - 1
Struggling to Figure Out The Structure of Biom File
#287 opened by hlee885 - 0
- 0
when doing cluster_features for metaphlan output (shotgun metagenomics), need to set different presence threshold
#284 opened by amnona - 0
- 0
- 0
report number of samples and features after read()
#266 opened by amnona - 0
- 0
join_experiments need to set md5 data in the exp info
#260 opened by amnona - 0
- 0
- 0
inplace in join_metadata_fields is True by default
#233 opened by amnona - 0
get warning when doing "read_amplicon()"
#271 opened by amnona - 0
update __version__
#224 opened by amnona - 0
bug in join_metadata_fields
#231 opened by amnona - 0
enable rotation for barx_label_kwargs in plot()
#269 opened by amnona - 0
- 0
- 0
Installation problems
#267 opened by baobabprince - 0
Problem with rarifying unnormalized experiments
#265 opened by amnona - 0
- 0
filter_prevalence() field parameter not working
#262 opened by amnona - 0
enable single value input in filter_by_metadata()
#261 opened by amnona - 0
- 0
io.read() has the sep='\t' set so cannot re-set it in the sample_metadata_kwargs
#258 opened by amnona - 0
- 0
first and last feature in heatmap
#243 opened by amnona - 0
normalize diff_abundance results with rank to -1/1
#242 opened by amnona - 1
- 0
Add an option to read metadata from csv files
#234 opened by baobabprince - 0
filter_mean_abundance on unnormalized data
#232 opened by amnona - 1
add values to experiment.iterate
#225 opened by amnona - 0
- 1
Add unique values iterator over samples
#207 opened by amnona - 0
add per row normalization to heatmap
#223 opened by amnona - 1
Experiment.reorder() is not getting the axis correctly
#217 opened by amnona - 0
cluster_features broken
#216 opened by amnona - 0
get rid of skbio
#212 opened by amnona - 0
add un-normalize to save()
#206 opened by amnona - 0
create ratioexperiment class
#205 opened by amnona