biocore/qurro

Issues

• Update the README to specify which Qurro version should be installed based on your QIIME 2 version

  #328 opened 2 years ago by fedarko
  10

• conda-forge recipe now requires Python >= 3.7, < 3.8.0a0 -- this prevents installation from conda into QIIME 2 environments

  #327 opened 2 years ago by fedarko
  2

• Installation error "pip's dependency resolver does not currently take into account all the packages that are installed."

  #330 opened a year ago by ivanllampy
  3

• Qurro crashes with ultra high dimensional readouts

  #329 opened 2 years ago by mortonjt
  2

• Split up taxonomy annotations into multiple columns, one for each level

  #305 opened 5 years ago by fedarko
  4

• Qurro will break on newer (>= 2020.11) versions of QIIME 2

  #315 opened 2 years ago by fedarko
  5

• Switch to GitHub actions for CI

  #316 opened 2 years ago by gibsramen
  3

• Support excluding metadata columns from the "sample plot data" output TSV

  #306 opened 3 years ago by fedarko
  0

• Save multiple log-ratio selections before exporting

  #321 opened 3 years ago by mestaki
  0

• Broken link in ALDEx2 tutorial

  #319 opened 3 years ago by gibsramen
  0

• Discuss log-ratio generalizability / training and test splits in a tutorial?

  #317 opened 3 years ago by fedarko
  0

• TypeError: precision_score() got an unexpected keyword argument 'Y_pred'

  #314 opened 4 years ago by 3TInfoTinker
  2

• Checking for ratio values

  #303 opened 5 years ago by pavlo888
  18

• species level

  #310 opened 4 years ago by pavlo888
  2

• zsh: command not found: qurro

  #311 opened 4 years ago by johannesbjork
  2

• TypeError: astype() got an unexpected keyword argument 'copy'

  #312 opened 4 years ago by johannesbjork
  3

• Move "Apply" button for autoselection down a block and center it

  #309 opened 5 years ago by fedarko
  0

• Add inverse of "contains text separated by |" option

  #308 opened 5 years ago by fedarko
  0

• Adjust matching to be more consistent to Emperor/Empress

  #296 opened 5 years ago by fedarko
  0

• Add nicer API for using Qurro outside of QIIME 2 but from within Python

  #307 opened 5 years ago by fedarko
  0

• Clarify explanation of "differentials"

  #281 opened 5 years ago by fedarko
  1

• Support configurable "rank types"

  #283 opened 5 years ago by fedarko
  0

• Support textual searching via regular expressions

  #302 opened 5 years ago by gibsramen
  3

• Update documentation to specify that min python version is 3.6

  #295 opened 5 years ago by fedarko
  0

• Add "Classic QIIME Colors" color scheme for categorical data

  #300 opened 5 years ago by fedarko
  2

• Add more context to demo datasets

  #297 opened 5 years ago by fedarko
  0

• Put feature metadata columns before (to the left of) ranking columns in the DataTables

  #280 opened 5 years ago by fedarko
  0

• Add TCGA and color composition datasets to Qurro demos

  #285 opened 5 years ago by fedarko
  0

• Add "data sources" links / references to the bottom for the color composition data and TCGA data

  #290 opened 5 years ago by fedarko
  0

• Support configuring circle size in the sample plot

  #299 opened 5 years ago by fedarko
  0

• Better rank plot colorschemes for accommodating users with colorblindness

  #298 opened 5 years ago by fedarko
  0

• Add option to lock log-ratio axis

  #288 opened 5 years ago by gibsramen
  2

• Boxplots don't work in Safari

  #294 opened 5 years ago by fedarko
  0

• Document precision losses in metadata/etc. for standalone Qurro

  #293 opened 5 years ago by fedarko
  0

• Export all feature ranking/metadata column info for selected features

  #292 opened 5 years ago by fedarko
  0

• If you leave the boxplot checkbox checked, then navigate "back" from the page, then navigate "forwards" to return to the Qurro plot, then the sample plot doesn't show up as a boxplot

  #291 opened 5 years ago by fedarko
  0

• _metadata_utils.read_metadata_file() converts empty strings to NaNs and leaves the NaNs in the output

  #273 opened 5 years ago by fedarko
  2

• Finish updating moving pictures tutorial

  #268 opened 5 years ago by fedarko
  0

• Adjust "make notebooks" command to fail when an external command fails

  #289 opened 5 years ago by fedarko
  2

• Support showing two log-ratios at once

  #269 opened 5 years ago by fedarko
  1

• Add filtering step to >= 11 week-old mice in DEICODE sleep apnea tutorials

  #287 opened 5 years ago by fedarko
  0

• Document workflow of tool with not-just-microbiome datasets

  #267 opened 5 years ago by fedarko
  1

• Support saving/loading the "state" of the visualization (what fields are selected, etc.)

  #270 opened 5 years ago by fedarko
  0

• When you zoom in super far on the rank plot, the display breaks a bit

  #284 opened 5 years ago by fedarko
  0

• Update BIOM version required

  #272 opened 5 years ago by fedarko
  0

• More rank plot color schemes

  #278 opened 5 years ago by fedarko
  0

• support reversed color schemes

  #277 opened 5 years ago by gwarmstrong
  3

• Some Qarcoal tests failing on Travis

  #271 opened 5 years ago by gibsramen
  4

• Add "Current Ranking" to Feature DataTables

  #274 opened 5 years ago by gibsramen
  0

• Add "Sample Presence Count" to Feature DataTables

  #266 opened 5 years ago by gibsramen
  3