biocyberman

2024_DataEng

Data Engineering class

2029-09-18-aalborg

aauLatexTemplates

A collection of Aalborg University LaTeX-templates

abra

Assembly Based ReAligner

admiral

ADaM in R Asset Library

admiralmetabolic

Metabolic package extension of admiral

covid19

covid19

METAREP

METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics

pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

RAPIDR

RAPIDR: Reliable Accurate Prenatal non-Invasive Diagnosis R

biocyberman/covid19

covid19

biocyberman/machine-learning-book

Code Repository for Machine Learning with PyTorch and Scikit-Learn

biocyberman/2024_DataEng

Data Engineering class

biocyberman/admiral

ADaM in R Asset Library

biocyberman/admiralmetabolic

Metabolic package extension of admiral

biocyberman/augur

Pipeline components for real-time phylodynamic analysis

biocyberman/auspice

Web app for visualizing pathogen evolution

biocyberman/basicgeometry

This is an R package to illustrate R package development by calculating basic geometry

biocyberman/beagle-lib

general purpose library for evaluating the likelihood of sequence evolution on trees

biocyberman/bioconda-recipes

Conda recipes for the bioconda channel.

biocyberman/covid

Temporal variation in transmission during the COVID-19 outbreak

biocyberman/covid-rt-estimates

National and subnational estimates of the time-varying reproduction number for Covid-19

biocyberman/covidregionaldata

An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisations, and tests. National level data is also supported using a range of data sources as well as linelist data and links to intervention data sets.

biocyberman/data_science_intro

Introduction to Data Science Machine Learning with hands-on approach

biocyberman/deepops

Tools for building GPU clusters

biocyberman/elbencho

A distributed storage benchmark for file systems, object stores & block devices with support for GPUs

biocyberman/fpart

Sort files and pack them into partitions

biocyberman/gpu-monitoring-tools

Tools for monitoring NVIDIA GPUs on Linux

biocyberman/kableExtra

Construct Complex Table with knitr::kable() + pipe.

biocyberman/mish-cuda

Mish Activation Function for PyTorch

biocyberman/ncov

Nextstrain build for novel coronavirus SARS-CoV-2

biocyberman/nextclade

Assign SARS-CoV-2 clades in the browser

biocyberman/packer-maas

Packer templates to create MAAS deployable images

biocyberman/pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

biocyberman/prometheus-slurm-exporter

Prometheus exporter for performance metrics from Slurm.

biocyberman/pyinstaller

Freeze (package) Python programs into stand-alone executables

biocyberman/raxml-ng

RAxML Next Generation: faster, easier-to-use and more flexible

biocyberman/treetime

Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

biocyberman/vast-exporter

VAST Prometheus Exporter

biocyberman/vscode-sas-extension

This SAS Extension for Visual Studio Code provides support for the SAS language, including features such as SAS syntax highlighting, code completion, hover help, code folding, outline, SAS code snippets and run SAS code.