The Genome Analysis Toolkit
See http://www.broadinstitute.org/gatk/
- Features specific to our fork:
- HTCondor driver (https://github.com/biodev/HTCondor_drivers)
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
Java
See http://www.broadinstitute.org/gatk/