Pinned Repositories
100-Days-Of-ML-Code
100 Days of ML Coding
2019-smORF
Scripts to identify small open reading frames using ribosome profiling data
af2complex
Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
bio-pipeline
My collection of light bioinformatics analysis pipelines for specific tasks
DupGen_finder
A pipeline used to identify different modes of duplicated gene pairs
FunGAP
FunGAP: fungal Genome Annotation Pipeline
Liftoff
An accurate GFF3/GTF lift over pipeline
qvina
Accurately speed up AutoDock Vina
ribotricer
A tool for accurately detecting actively translating ORFs from Ribo-seq data
scripts-for-SSR-project
128 Phytophthora Isolates Reveal Species-Specific Microsatellite Distribution
biogeeker's Repositories
biogeeker/cgat-apps
cgat-apps repository
biogeeker/syntenyPlotteR
R package to draw syntenic plots in 3 different styles
biogeeker/NucleoATAC
nucleosome calling using ATAC-seq
biogeeker/ATAC-seq_QC_analysis
Atac-seq QC matrix
biogeeker/seqtk
Toolkit for processing sequences in FASTA/Q formats
biogeeker/free-python-games
Free Python Games
biogeeker/TOBIAS
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
biogeeker/IRFinder
Detecting intron retention from RNA-Seq experiments
biogeeker/LINKVIEW
DNA序列比对结果 可视化展示工具
biogeeker/python-guide
Python best practices guidebook, written for humans.
biogeeker/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
biogeeker/interproscan
biogeeker/OrthoFinder
Phylogenetic orthology inference for comparative genomics
biogeeker/DupGen_finder
A pipeline used to identify different modes of duplicated gene pairs
biogeeker/pipeline-nanopore-ref-isoforms
Pipeline for annotating genomes using long read transcriptomics data with stringtie and other tools
biogeeker/Metallaxis
A Python GUI VCF viewer for SNP, indels, and TE.
biogeeker/Bat1K
Perl scripts used in Bat1K annotation for adding splice informative isoforms
biogeeker/jcvi
Python library to facilitate genome assembly, annotation and comparative genomics
biogeeker/FunGAP
FunGAP: fungal Genome Annotation Pipeline
biogeeker/funannotate
Eukaryotic Genome Annotation Pipeline
biogeeker/awesome-machine-learning
A curated list of awesome Machine Learning frameworks, libraries and software.
biogeeker/AiLearning
AiLearning: 机器学习 - MachineLearning - ML、深度学习 - DeepLearning - DL、自然语言处理 NLP
biogeeker/GUSHR
Generating UTRs from SHort Reads
biogeeker/Python-100-Days
Python - 100天从新手到大师
biogeeker/ANGEL
Robust Open Reading Frame prediction (ANGLE re-implementation)
biogeeker/leetcode
LeetCode Solutions: A Record of My Problem Solving Journey.( leetcode题解,记录自己的leetcode解题之路。)
biogeeker/DeepLearning-500-questions
深度学习500问,以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述,以帮助自己及有需要的读者。 全书分为18个章节,50余万字。由于水平有限,书中不妥之处恳请广大读者批评指正。 未完待续............ 如有意合作,联系scutjy2015@163.com 版权所有,违权必究 Tan 2018.06
biogeeker/CCMpred
Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
biogeeker/LeetCodeAnimation
Demonstrate all the questions on LeetCode in the form of animation.(用动画的形式呈现解LeetCode题目的思路)
biogeeker/learn_dl
Deep learning algorithms source code for beginners