BioImage.IO

BioImage.IO: building AI-powered bioimage analysis model zoo

Pinned Repositories

bioengine
Language:Jupyter Notebook8 4 50
bioimage-io-resources
Model repository for bioimage.io
16 9 159
bioimage.io
Website for the BioImage Model zoo -- a model zoo for bioimage analysis.
Language:CSS57 5 18120
bioimageio-chatbot
Your Personal Assistant in Computational Bioimaging.
Language:Jupyter Notebook36 1 2410
collection
Maintains the resources displayed on bioimage.io (Successor to collection-bioimage-io)
Language:Python2 2 436
collection-bioimage-io
(deprecated in favor of bioimage-io/collection) RDF collection for BioImage.IO
Language:Python5 6 1229
core-bioimage-io-python
Python libraries for loading, running and packaging bioimage.io models
Language:Jupyter Notebook28 5 16322
JDLL
The Java library to run Deep Learning models
Language:Java29 11 186
napari-bioimageio
Language:Python7 3 22
spec-bioimage-io
Specification for the bioimage.io model description file.
Language:Python19 8 21217

BioImage.IO's Repositories

bioimage-io/bioimage.io
Website for the BioImage Model zoo -- a model zoo for bioimage analysis.
Language:CSS57 5 18120
bioimage-io/bioimageio-chatbot
Your Personal Assistant in Computational Bioimaging.
Language:Jupyter Notebook36 1 2410
bioimage-io/JDLL
The Java library to run Deep Learning models
Language:Java29 11 186
bioimage-io/core-bioimage-io-python
Python libraries for loading, running and packaging bioimage.io models
Language:Jupyter Notebook28 5 16322
bioimage-io/spec-bioimage-io
Specification for the bioimage.io model description file.
Language:Python19 8 21217
bioimage-io/bioengine
Language:Jupyter Notebook8 4 50
bioimage-io/napari-bioimageio
Language:Python7 3 22
bioimage-io/collection-bioimage-io
(deprecated in favor of bioimage-io/collection) RDF collection for BioImage.IO
Language:Python5 6 1229
bioimage-io/bioimageio-colab
Collaborative image annotation and model training with human in the loop
Language:Jupyter Notebook4 2 20
bioimage-io/Workshop-June2024-Madrid
Repository for hosting all resources and details related to the AI4Life and BioImage Model Zoo workshop scheduled for June 2024 in Madrid.o
Language:Jupyter Notebook4 3 22
bioimage-io/bioengine-model-runner
Language:Python3 5 62
bioimage-io/collection
Maintains the resources displayed on bioimage.io (Successor to collection-bioimage-io)
Language:Python2 2 436
bioimage-io/tensorflow-1-java-interface
Language:Java2 5 0
bioimage-io/tensorflow-2-java-interface
Language:Java2 5 11
bioimage-io/bioengine-web-client
Web Client for running models via the BioEngine
Language:JavaScript1
bioimage-io/bioimageio-uploader
Language:Svelte1 4 682
bioimage-io/fiji-bioimage-io
1 10 01
bioimage-io/onnx-java-interface
Language:Java1 5 0
bioimage-io/pytorch-java-interface
Language:Java1 6 0
bioimage-io/tensorflow-2-java-interface-0.2.0
Language:Java1 5 0
bioimage-io/bioengine-k8s
Language:Python0 01
bioimage-io/bioimage-io.github.io
Language:HTML
bioimage-io/bioimageio-uploader-firebase
Firebase test of bioimageio
Language:JavaScript
bioimage-io/bioimageio-uploader-service
Review service for bioimage.io uploader
Language:Python
bioimage-io/collection-bioimage-io-cache
Maintains an S3 Cache of the bioimage.io collection
4 0
bioimage-io/hypha
A serverless application framework for large-scale data management and AI model serving
Language:Python0 0
bioimage-io/hypha-helm-charts
Language:Smarty0 0
bioimage-io/partner-compatibility
CI to check which resources maintained by bioimage-io/collection are compatible with registered community partners
bioimage-io/pytorch-java-interface-javacpp
Language:Java4 0
bioimage-io/tensorflow-2-java-interface-0.5.0
Language:Java4 0