bioimage-io/spec-bioimage-io

Issues

• `get_resource_package_content()` given weights priority, downloads the weights

  #638 opened 3 months ago by thodkatz
  1

• SpaceInputAxis id not taken into account with Pydantic 2.9

  #631 opened 3 months ago by jdeschamps
  4

• codec error on v0_5.Https() using windows

  #633 opened 3 months ago by thodkatz
  0

• v4 issues and design ideas

  #629 opened 4 months ago by thodkatz
  1

• Validation error for subsequent call of `load_description`

  #622 opened 5 months ago by thodkatz
  3

• Missing output channel description for instance segmentation

  #621 opened 5 months ago by danifranco
  0

• BUG: Calling `save_bioimage_package` twice causes validation error.

  #619 opened 5 months ago by melisande-c
  3

• Request to allow `outputs` in `ModelDescr` to be `Sequence[Sequence[OutputTensorDescr]]`

  #615 opened 7 months ago by qin-yu
  0

• Improve user documentation of the spec

  #606 opened 7 months ago by FynnBe
  2

• pretty validation errors does not work

  #591 opened 7 months ago by esgomezm
  1

• Add timeout to requests calls

  #602 opened 7 months ago by constantinpape
  0

• Example on Description: 5.2 `ParameterizedSize` should be `SizeReference`

  #598 opened 8 months ago by qin-yu
  4

• Creation of processing operations

  #588 opened 8 months ago by constantinpape
  2

• Incorporate Processing mode to axes

  #526 opened 8 months ago by FynnBe
  4

• Remove weights format attachments

  #532 opened 8 months ago by FynnBe
  0

• Upgrade `bio-rdf-validator.imjoy.html` to use patched spec

  #551 opened 8 months ago by jmetz
  2

• Pre and post processing: denormalize

  #587 opened 8 months ago by jdeschamps
  1

• Zenodo public download link alternative

  #537 opened 9 months ago by qin-yu
  6

• Define .bioimageio.yaml suffix

  #522 opened 9 months ago by FynnBe
  4

• Missing type in the spec

  #538 opened 9 months ago by oeway
  1

• halo should only be allowed for output axes with a size reference

  #579 opened 9 months ago by FynnBe
  4

• don't download anything from the internet when importing top-level stuff

  #490 opened 10 months ago by k-dominik
  3

• add `pbar=None` kwarg to `load_raw_resource_description`

  #500 opened 2 years ago by FynnBe
  0

• Is "outputs" a required field or an optional one?

  #519 opened 10 months ago by mese79
  2

• Improve attachments

  #517 opened 10 months ago by FynnBe
  3

• Definition of implicit tensors

  #493 opened 10 months ago by oeway
  5

• Document framework version defaults

  #497 opened 10 months ago by FynnBe
  1

• missing validation: all weight entries but one need parents

  #498 opened 10 months ago by FynnBe
  1

• Request to include pixel size/resolution in the spec

  #499 opened 10 months ago by petebankhead
  3

• Confusion because spec and core provide bioimageio CLI

  #516 opened 10 months ago by FynnBe
  4

• Update to build conda package with boa

  #491 opened 10 months ago by FynnBe
  1

• The test-input image caused by pickle cannot be read in the web-python environment

  #542 opened 10 months ago by Nanguage
  6

• optional inputs (for points, masks and labels)

  #527 opened 10 months ago by FynnBe
  0

• Move `bio-rdf-validator.imjoy.html` to a dedicated folder and add `manifest.imjoy.json` to root, for plugin discovery

  #550 opened a year ago by jmetz
  4

• `get_resource_package_content` doesn't properly resolve filenames

  #547 opened a year ago by k-dominik
  0

• Stop using the abbreviation "RDF"

  #539 opened a year ago by FynnBe
  10

• Notebook dependencies

  #535 opened a year ago by FynnBe
  12

• models with non-static outputs

  #525 opened a year ago by esgomezm
  6

• [proposal]: Remove version specification in ImJoy plugin. Original title: Get string index error presumably from a bad `oid` in `spec/rdf/v0_2/schema.py`

  #533 opened a year ago by jmetz
  11

• Use EDAM ontology to improve our tags

  #530 opened a year ago by FynnBe
  0

• Undetermined order of postprocessings collides with use of `reference_tensor`

  #524 opened a year ago by FynnBe
  0

• Test inputs require a batch size of 1

  #520 opened a year ago by JonasHell
  0

• Limit valid RDF type values

  #518 opened 2 years ago by FynnBe
  4

• Drop support for Python 3.7 and 3.8

  #515 opened 2 years ago by FynnBe
  7

• Author's Name is required but accepts Empty String

  #512 opened 2 years ago by mese79
  5

• tox fails

  #494 opened 2 years ago by FynnBe
  0

• Json schemas of the specs

  #507 opened 2 years ago by ivan-ea
  1

• onnx model constrains input shape

  #509 opened 2 years ago by FynnBe
  0

• Require sensible minimum shapes for models

  #506 opened 2 years ago by k-dominik
  7

• Release?

  #480 opened 2 years ago by constantinpape
  1