bioinfo-biols/SEVtras

Issues

• AttributeError: 'csc_matrix' object has no attribute 'A'

  #32 opened 2 months ago by fusca9
  7

• Would you suggest using the raw_SEVtras.h5ad , generated by the sEV_recognizer, as the adata_cell parameter in ESAI_calculator?

  #31 opened 2 months ago by kingwzun
  2

• IndexError while running sEVtras calculator

  #30 opened 3 months ago by songnsnow
  3

• Length mismatch error - No matched cell sample in part 2

  #29 opened 3 months ago by giuliaelgarcia
  3

• Exception: No gene sets passed through filtering condition

  #28 opened 3 months ago by Souzuko
  1

• Can anndata be used as the input file for part I for SEV recognition?

  #27 opened 4 months ago by giuliaelgarcia
  1

• All the scores of the sEVs are the same

  #22 opened 5 months ago by gstaryu
  3

• ValueError: Bin edges must be unique:

  #18 opened 8 months ago by wangpenhok
  8

• Error in SEVtras.sEV_recognizer

  #26 opened 5 months ago by janicewu123
  2

• The number of droplets in sEV_recognizer output

  #25 opened 6 months ago by HZT55
  1

• Error in sEV_recognizer - output path file creation issue w/ multiple samples?

  #13 opened a year ago by 123chrisc
  6

• issues about inport data in SEVtras

  #20 opened 7 months ago by TATABOX99
  24

• The process was interrupted after running 7/16 samples

  #10 opened a year ago by lanathemoon
  8

• Does SEVtras apply to data generated by STRT-seq or SMART-seq2?

  #24 opened 6 months ago by SayaGoodBye
  1

• Issues of batch in sEV_recognizer and sample in ESAI_calculator

  #23 opened 7 months ago by Jinqingchang
  6

• Input data type

  #21 opened 7 months ago by liangxs7015
  4

• error in SEVtras.ESAI_calculator when constructing adata_cell.raw

  #19 opened 8 months ago by Jinqingchang
  2

• Error reported in SEVtras.ESAI_calculator

  #8 opened a year ago by YangXinyan
  20

• whether SEVtras is suitable for 10x Genomics Spatial Transcriptomics?

  #3 opened a year ago by xiaojjia
  4

• Error in SEVtras.sEV_recognizer

  #17 opened 9 months ago by Yujj1123
  8

• UnboundLocalError: local variable 'ev_list' referenced before assignment

  #15 opened 10 months ago by GLking123
  2

• How can we understand "sEV-containing droplets"?

  #16 opened 10 months ago by onmyojiyys
  1

• Other: ValueError: max() arg is an empty sequence

  #7 opened a year ago by FLY-Fiancee
  10

• Some issues about output data analyze

  #14 opened a year ago by zonzero
  1

• When I run larger 10X raw_feature_bc_matrix the process always be interrupted without any warning

  #12 opened a year ago by hajihajilala
  1

• application and visualization

  #11 opened a year ago by rollisuntory
  3

• ValueError: max() arg is an empty sequence

  #4 opened a year ago by zonzero
  8

• How to extract the information that the vesicle belongs to which cell secretes it?

  #6 opened a year ago by WhaleGe
  1

• ValueError: Length mismatch in deconvolver

  #5 opened a year ago by WhaleGe
  2

• SEVtras score were all NaNs

  #2 opened a year ago by zhangyz1997
  2