Institut Curie, Bioinformatics Core Facility
bioinformatics platform of the Institut Curie
Paris, France
Pinned Repositories
ChIP-seq
Nextflow pipeline for ChIP-seq data quality controls and analysis
geniac
Automatic Configuration GENerator and Installer for nextflow pipeline. This is a set of utilities to implement the best practises for the development of bioinformatics analysis pipelines with nextflow
HiTC
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/HiTC.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=HiTC.
mpiBWA
mpiSORT
nf-VIF
A Nextflow-based Virus Insertion Finder
pyvif
Python Virus Integration Finder detects integration site of virus in human genome using capture pacbio.
RNA-seq
Nextflow pipeline for RNA-seq pre-analysis (quality controls, genes/isoforms expression, isoform de-novo identification)
TMB
Tumor Mutational Burden
trainings
Ressources for Boinformatics Trainings
Institut Curie, Bioinformatics Core Facility's Repositories
bioinfo-pf-curie/TMB
Tumor Mutational Burden
bioinfo-pf-curie/geniac
Automatic Configuration GENerator and Installer for nextflow pipeline. This is a set of utilities to implement the best practises for the development of bioinformatics analysis pipelines with nextflow
bioinfo-pf-curie/trainings
Ressources for Boinformatics Trainings
bioinfo-pf-curie/RNA-seq
Nextflow pipeline for RNA-seq pre-analysis (quality controls, genes/isoforms expression, isoform de-novo identification)
bioinfo-pf-curie/mpiBWA
bioinfo-pf-curie/nf-VIF
A Nextflow-based Virus Insertion Finder
bioinfo-pf-curie/ChIP-seq
Nextflow pipeline for ChIP-seq data quality controls and analysis
bioinfo-pf-curie/mpiSORT
bioinfo-pf-curie/ATAC-seq
Nextflow pipeline for ATAC-seq data analysis
bioinfo-pf-curie/geniac-template
This is a template to pipeline with the best practises for the development of bioinformatics analysis pipelines with nextflow and geniac (Automatic Configuration GENerator and Installer for nextflow pipeline).
bioinfo-pf-curie/myproms
Mass spectrometry-based proteomics data management and analysis software
bioinfo-pf-curie/raw-qc
Nextflow pipeline for quality controls and trimming of raw sequencing data
bioinfo-pf-curie/annotationMaker
Build indexes and annotation files for Nextflow pipelines
bioinfo-pf-curie/as-mapping
Nextflow pipeline for Allele-specific analysis
bioinfo-pf-curie/mpiMarkDup
bioinfo-pf-curie/nf-CRISPR
Nextflow pipeline for CRISPR screen processing
bioinfo-pf-curie/nf-neoant
Detection of neoantigens from WES and RNA sequencing data
bioinfo-pf-curie/vegan
Variant calling pipeline for whole Exome and whole Genome sequencing cANcer data
bioinfo-pf-curie/scChIP-inDrop
inDrop single-cell ChIPseq data analysis
bioinfo-pf-curie/scRNA-SmartSeq3
Smartseq3 single-cell RNAseq data analysis.
bioinfo-pf-curie/4geniac
Docker containers for geniac
bioinfo-pf-curie/biogitflow
Development worklow protocols for bioinformatics pipelines with git and gitlab
bioinfo-pf-curie/bioinfo-pf-curie.github.io
bioinfo-pf-curie/bioshiny-modules-library
R package containing modules for an easier Shiny Apps development
bioinfo-pf-curie/clip-seq
This pipeline was set up to process CLIP-seq data from aligned sequencing reads. It includes two parts: i/the reads processing (cleaning, mapping, peak calling) and the differential analysis.
bioinfo-pf-curie/cookieCrispR
Shiny R package for CRISPR screen analysis
bioinfo-pf-curie/geniac-demo
This is a demo pipeline with the best practises for the development of bioinformatics analysis pipelines with nextflow and geniac (Automatic Configuration GENerator and Installer for nextflow pipeline).
bioinfo-pf-curie/geniac-demo-dsl2
This is a demo pipeline with the best practises for the development of bioinformatics analysis pipelines with nextflow DSL2 and geniac (Automatic Configuration GENerator and Installer for nextflow pipeline).
bioinfo-pf-curie/MDMmetals
Data analysis from Solier et al.
bioinfo-pf-curie/PacBioRunQC