bioinfo-pf-curie/TMB

Issues

• Add config files for more tools

  #27 opened 7 months ago by bounlu
  0

• Add `.bcf.gz` support

  #28 opened 7 months ago by bounlu
  0

• `--filterLowQual` does not work

  #21 opened a year ago by bounlu
  3

• omitting `--filterNonCoding` results in error

  #25 opened 8 months ago by bounlu
  0

• Warning : given vaf >> vaf in config. wrong vaf threshold ?

  #24 opened 10 months ago by dbhayal9
  3

• Is the VEP annotated vcf supported?

  #8 opened a year ago by gudeqing
  1

• Configuration file for Ensembl VEP

  #20 opened a year ago by MGCarta
  1

• Issue in creating config.yml file for vep annotated vcf file

  #22 opened a year ago by Raghu9721
  2

• pyEffGenomeSize throws error - single positional indexer is out-of-bounds

  #18 opened 2 years ago by jpcartailler
  0

• FileNotFoundError: [Errno 2] No such file or directory: 'pyeffg.intersect.bed'

  #5 opened 4 years ago by deb0612
  6

• BED file header

  #16 opened 2 years ago by nservant
  0

• How to use for WGS data

  #13 opened 2 years ago by praveenraj2018
  2

• An error is reported while running

  #15 opened 2 years ago by huilin-al
  1

• pyEffGenomeSize.py error

  #14 opened 2 years ago by wt12318
  2

• Add to conda

  #11 opened 2 years ago by FriederikeHanssen
  0

• Usage question on databases.yml and calling.yml

  #12 opened 3 years ago by FriederikeHanssen
  1

• Minimum alternative allele depth

  #10 opened 3 years ago by HMR24
  1

• how to use snpeff annotation with databases gnomAD，1K

  #9 opened 3 years ago by user-tq
  3

• Which bed file should be used for input.

  #7 opened 3 years ago by lincj1994
  1

• vcf file contains two sample

  #6 opened 4 years ago by wangdepin
  2

• The format of input

  #4 opened 4 years ago by deb0612
  1

• sys.stderr.write("Error: " + len(vcf.samples)

  #3 opened 4 years ago by deb0612
  3

• Filtres coding / Non coding

  #2 opened 4 years ago by Ephedria
  4

• Filtre LowQual trop stringent

  #1 opened 4 years ago by tomgutman
  0