Pinned Repositories
ATAC-seq
Basic workflow for ATAC-seq analysis
cancer-hic-norm
Normalization of cancer Hi-C data
cooler
A cool place to store your Hi-C
daviddarnes.github.io
🌐 My site for showing experiments, tools and other projects
defuse
An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data
EMTiron
Data analysis project of the study "CD44 regulates cellular plasticity by mediating iron endocytosis". Müller, Sindikubwabo et al. 2019
github-metadata
Jekyll plugin to propagate the `site.github` namespace and set default values for use with GitHub Pages.
HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
nf-core-hic
Analysis of Chromosome Conformation Capture data (Hi-C). Main fork @
nservant's Repositories
nservant/HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
nservant/cancer-hic-norm
Normalization of cancer Hi-C data
nservant/nf-core-hic
Analysis of Chromosome Conformation Capture data (Hi-C). Main fork @
nservant/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
nservant/HiTC
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/HiTC.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=HiTC.
nservant/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nservant/multi-package-containers
Testing building mulled containers for multi-requirement tools.
nservant/test-datasets
Test data to be used for automated testing with the nf-core pipelines
nservant/ATAC-seq
Basic workflow for ATAC-seq analysis
nservant/cooler
A cool place to store your Hi-C
nservant/daviddarnes.github.io
🌐 My site for showing experiments, tools and other projects
nservant/defuse
An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data
nservant/EMTiron
Data analysis project of the study "CD44 regulates cellular plasticity by mediating iron endocytosis". Müller, Sindikubwabo et al. 2019
nservant/github-metadata
Jekyll plugin to propagate the `site.github` namespace and set default values for use with GitHub Pages.
nservant/HiCDataHumanIMR90
HiCDataHumanIMR90 BioC data package
nservant/iced
Normalizing Hi-C contact counts efficiently
nservant/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
nservant/nf-co.re
Files for the main nf-core website >>>
nservant/nf-website
Nextflow public web site
nservant/NGI-smRNAseq
Nextflow Small RNA Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
nservant/rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
nservant/Sarek
Detect germline or somatic variants from normal or tumour/normal whole-genome sequencing data
nservant/SNPsplit
Allele-specific alignment sorting