Issues
- 0
how to set temporary home directory
#650 opened by ahmedabbas811 - 0
mergeSAM.log error
#649 opened by hcsun1 - 0
sbatch: error: Invalid --time specification
#645 opened by Hanjiangna - 0
what is the Dumped_Pairs files about
#648 opened by Hanjiangna - 0
Valid_interaction_pairs is 0
#647 opened by Hanjiangna - 0
- 0
bowtie2-align died with signal 7 (BUS)
#644 opened by mengying0714 - 2
Can Allele specific mapping handle polyploids?
#598 opened by Adamtaranto - 6
Is there any solution about using DdeI in HiC-PRO?
#601 opened by khsjh - 0
Automatically ends HiC-Pro without any prompt
#643 opened by XuanZhang-Black - 1
Error after installation using conda
#641 opened by aplearnercc - 0
Error in Hicpro2higlass
#642 opened by ratheraarif - 1
When I run the last step of HiC-Pro, “ice_norm”, I get the error:“binary operator expected ”
#640 opened by kuangzhuoran - 1
HiC-Pro: Error in Quality Checks
#638 opened by AnushkaChaturvedi - 1
I would like to understand if the software supports specifying multiple values for LIGATION_SITE in a single config file
#639 opened by tangyueting - 3
Error in HiC-Pro 3.1.0 step1
#637 opened by AnushkaChaturvedi - 5
"Forward and reverse reads not paired. Check that BAM files have the same read names and are sorted."
#633 opened by panapapa14 - 0
- 0
- 0
bowtie install errors
#634 opened by elirahbar - 1
Low Read Alignment in Initial Bowtie Step
#626 opened by IzaakH-A1 - 2
- 1
Polyploidy
#630 opened by Rhia15 - 2
Process data type
#632 opened by Blosers - 1
Restriction fragments difference generated from HiC-Pro (digest_genome.py) and Juicer for Arima
#631 opened by vikaskumar1019 - 0
- 0
make: *** [bowtie_pairing] Error 1
#627 opened by wangguiqian - 0
hicpro2juicebox.sh not work for nextflow pipe https://github.com/nservant/nf-core-hic/tree/master
#625 opened by XuewenWangUGA - 3
make: *** No targets. Stop.
#603 opened by AlcaArctica - 1
- 0
contact map in complete format instead of upper
#623 opened by usernicai - 0
HiC-Pro for ChIA-PET data analysis
#622 opened by Huang-XN - 0
From allvalidpairs to mcool
#621 opened by ratheraarif - 0
- 13
converting allvalidpairs to pairs
#619 opened by ratheraarif - 3
gensub: third argument treated as 1
#615 opened by KarimKoleilat - 0
Bowtie2 alignment step1 ... make: /student2/software/hicpro/scripts/bowtie_wrap.sh: Command not found make: *** [/student2/software/hicpro/HiC-Pro-3.1.0/bin/../scripts//Makefile:88: bowtie_global] Error 127
#604 opened by lixinrong0118 - 1
Bowtie global error
#608 opened by CarolWuuu - 1
merge allValidPairs and convert to .hic
#614 opened by mw18f - 1
- 1
juicer jar tools in hicpro2juicebox.sh
#610 opened by usernicai - 1
hicpro2juicebox.sh: allValidPairs.pre_juicebox_sorted does not exist or does not contain any reads
#618 opened by TheRaspberryFox - 1
how to index bam files after sorting by reads name ?
#612 opened by wu123tj - 2
- 4
Exit: Read pairs extensions not defined
#605 opened by usernicai - 2
HiC-Pro --help
#611 opened by ryao-mdanderson - 1
Can I use hic-pro for Hi-C 3.0 ?
#609 opened by hanshanmengqi - 0
extra \n in hicpro2fithic.py
#602 opened by ay-lab - 0
allmapstat_r1 <- list.files(path=bwtDir, pattern=paste0("^[[:print:]]*",r1tag,"[[:print:]]*\\.mapstat$"), full.names=TRUE)
#600 opened by Oksanak22 - 0