AlcaArctica

Pinned Repositories

Unix_Workbench
Language:Shell0 1 00
bwa-mem2
The next version of bwa-mem
Language:C++730 35 215102
hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Language:C++567 30 70189
HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
Language:Python237 15 63470
smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
Language:C251 9 17024
canu
A single molecule sequence assembler for genomes large and small.
Language:C++667 54 2.3k179
MitoHiFi
Find, circularise and annotate mitogenome from PacBio assemblies
Language:Python171 5 8230
genomescope
Fast genome analysis from unassembled short reads
Language:JavaScript274 20 14557
KAT
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
Language:C++211 25 16352
HapHiC
HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
Language:Python155 4 969