nservant

nservant's Stars

• MultiQC/MultiQC

  Aggregate results from bioinformatics analyses across many samples into a single report.

  Language:JavaScript1.2k351.7k606

• mdozmorov/HiC_tools

  A collection of tools for Hi-C data analysis

  555366125

• FelixKrueger/TrimGalore

  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

  Language:Perl47921178150

• open2c/cooler

  A cool place to store your Hi-C

  Language:Python2091429851

• akdemirlab/HiCPlotter

  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

  Language:Python183155878

• MaayanLab/biojupies

  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

  Language:HTML110910830

• bioinfo-pf-curie/TMB

  Tumor Mutational Burden

  Language:Python5562416

• FelixKrueger/SNPsplit

  Allele-specific alignment sorting

  Language:Perl5387420

• vaquerizaslab/tadtool

  TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.

  Language:Python4432913

• dekkerlab/crane-nature-2015

  code associated with crane-nature-2015, 10.1038/nature14450

  Language:Perl347129

• aidenlab/JuiceboxLegacy

  OLD REPOSITORY - Go to

  Language:Java32121422

• biocore-ntnu/epic

  (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER

  Language:Python317866

• hiclib/iced

  Normalizing Hi-C contact counts efficiently

  Language:Python3023119