akdemirlab/HiCPlotter
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
Python
Issues
- 0
- 2
unbalanced matrix(hap2-hicpro/hic_results/matrix/sample1/iced/150000/sample1_150000_iced.matrix)! input should be a square matrix
#57 opened by Jiangjiangzhang6 - 0
Whole genome can be plotted only as matrix
#59 opened by yeeus - 0
- 0
Arcs for inter-chromosomal interacations
#56 opened by jeff-godwin - 0
- 0
insulation score
#54 opened by jdmontenegro - 0
HiCPlotter.py
#53 opened by tamerbio - 4
why not the figure just like this
#52 opened by Jiangjiangzhang6 - 2
- 1
- 0
Missing module
#50 opened by xiaoyonf - 0
Can not plot exon ?
#49 opened by wzhjlau2009 - 2
Change matrix color
#48 opened by KunFang93 - 0
- 2
Limitations with triple sparse format?
#40 opened by Dibabbudia - 0
chromosome pair HiC
#45 opened by yangxiaofeill - 2
rao et al 2014 reproducing results
#43 opened by Nohaosma - 0
add grib line between each two chromosome
#44 opened by xinwang-bio - 1
Setting a color range for the heatmap plot
#42 opened by rikrdo89 - 1
How to plot interaction heatmap as Triangle shape and add TAD information I alread have as annotation ?
#35 opened by qianXX - 5
- 1
TAD boundary files
#37 opened by Mr-Inamn - 1
- 1
- 5
- 1
How to place a circle(used for labeling the peak ) encircle the pixel in Hi-C heatmap instead of between two pixels
#38 opened by liufuyan2016 - 2
- 1
some question when comparing two matrix
#34 opened by mickish6002 - 1
Visualization question
#31 opened by skytguuu - 1
- 4
error of plot log2 matrix with peaks
#26 opened by skytguuu - 1
How to view .hic files
#29 opened by awezmm - 1
numpy error
#27 opened by skytguuu - 2
mpl_toolkits.axes_grid1 Module Issue
#28 opened by awezmm - 6
- 7
HiC-Pro multiple plots
#24 opened by lucaspatel - 5
- 1
- 1
- 3
Rotated heatmap plotting
#11 opened by Phlya - 5
Shifted plots?
#14 opened by dalessandra - 1
- 1
colorbar
#20 opened by RuiqinZheng - 1
Normalization by number of reads
#17 opened by Aurasg - 8
The input format of
#16 opened by yuzhang0327 - 5
- 4
error while running command from testRun.sh
#13 opened by alishka1988 - 3
Keep getting this strange error.
#12 opened by sameet - 2
Update manual with -up parameter
#10 opened by hanbinlu