Jiangjiangzhang6

Pinned Repositories

biser
A fast tool for detecting and decomposing segmental duplications in genome assemblies
Language:Jupyter Notebook47 4 420
3d-dna
3D de novo assembly (3D DNA) pipeline
Language:Shell207 12 18655
interproscan
Genome-scale protein function classification
Language:Java320 16 33768
Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Language:HTML414 13 668105
quast
Genome assembly evaluation tool
Language:AMPL0 0 00
verkko
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
Language:Python322 19 30831
NextDenovo
Fast and accurate de novo assembler for long reads
Language:C383 15 21653
DupGen_finder
A pipeline used to identify different modes of duplicated gene pairs
Language:C++97 3 2531
MCScanX
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
Language:CAP CDS251 15 7264
ggvenn
Venn Diagram by ggplot2, with really easy-to-use API.
Language:R170 6 4225