0xTCG/biser

Issues

• how to get those information from the output of Biser ?

  #40 opened 6 months ago by Shuixin-Li
  3

• How to filter the output BEDPE file?

  #34 opened 6 months ago by tiramisutes
  1

• Decomposition ID format

  #41 opened 6 months ago by csmolen6136
  1

• How to measure the length and frequency of Whole-Genome segmental duplications (SDs)?

  #39 opened 6 months ago by kuangzhuoran
  1

• genotype same segdups across individuals

  #38 opened 6 months ago by svedwards
  1

• need a positive control for BISER

  #37 opened 6 months ago by svedwards
  1

• ERROR: BISER failed (-11):

  #32 opened a year ago by WHY0929
  2

• Whether the number of contigs affects the efficiency of BISER

  #35 opened 9 months ago by life404
  1

• ask for help, the ERROR: BISER failed (-9):

  #36 opened 9 months ago by Jiangjiangzhang6
  2

• ERROR: BISER failed (-9):

  #26 opened 10 months ago by dorachu625
  2

• ERROR ：BISER failed (-11)

  #33 opened 9 months ago by jiangjiang030
  0

• It seems generate wrong alignment/CIGAR in bedpe results.

  #15 opened 10 months ago by yuanhao0626
  9

• biser failed -6

  #25 opened 10 months ago by jix2010
  3

• elementary SDs and core SDs

  #31 opened a year ago by likui345
  1

• Cannot modify the max error value when running biser

  #28 opened a year ago by yangyxt
  3

• How to run biser

  #30 opened a year ago by aravindpad
  7

• coordinate overlaps between pairs

  #18 opened a year ago by hrrsjeong
  1

• how to decomposing segmental duplications (SDs) when i have the SDs annotation files.

  #27 opened a year ago by zhoudreames
  2

• Error in ERROR Putative SD alignment: '' BISER failed (-11): '' (BISER v1.4

  #29 opened a year ago by kuangzhuoran
  2

• Issue with building docker

  #24 opened a year ago by aravindpad
  4

• some cross-genome SD not found in "within genome" SD sets

  #12 opened 2 years ago by hrrsjeong
  3

• biser long run time .

  #20 opened 2 years ago by ASBioinfo
  2

• BISER failing during putative alignment step

  #23 opened 2 years ago by docmanny
  1

• BISER completed on soft_mask, but failed on hard_masked genome.

  #22 opened 2 years ago by Weikai-47
  1

• biser v1.3 cannot accept any input files

  #21 opened 2 years ago by yangqimeng99
  2

• BISER failed:

  #14 opened 2 years ago by cicerocarlos-ufal
  2

• Does biser suitable for plant SD detection?

  #10 opened 2 years ago by Chenglin20170390
  3

• Very long runtime, is it possible to resume a killed run?

  #11 opened 2 years ago by EinarBaldvin
  4

• core region length in the elem file

  #13 opened 2 years ago by hrrsjeong
  2

• the result of biser with ucsc T2T-CHM13 v2.0 different from the sedef result download from ucsc

  #9 opened 2 years ago by zou-yawen
  2

• mismatch rate

  #7 opened 2 years ago by hrrsjeong
  1

• BEDPE fields in output

  #8 opened 2 years ago by saraebell
  1

• ERROR: BISER failed:

  #6 opened 2 years ago by 002-two
  2

• ERROR: __init__() got an unexpected keyword argument 'capture_output'

  #5 opened 2 years ago by Chenglin20170390
  11

• I/O error Raised from: std.internal.file.File.__init__.3 [e] /home/vagrant/.seq/lib/seq/stdlib/internal/file.seq:14:13

  #4 opened 2 years ago by jmkidd
  4

• install BISER (Error)

  #3 opened 2 years ago by saraebell
  7

• Chaisson bug 2

  #2 opened 3 years ago by calkan
  1

• Chaisson bug1

  #1 opened 3 years ago by calkan
  0