Nextomics/NextDenovo

Issues

• ModuleNotFoundError: No module named 'paralleltask'

  #211 opened 9 days ago by WengangXbio
  2

• Running out of disk space

  #212 opened 8 days ago by oskesr
  1

• NextDeNovo running for >4days with no expected outputs

  #210 opened 14 days ago by RominaSSBatista
  15

• ctg_graph error, (core dumped), returned non-zero exit status 134".

  #209 opened a month ago by usersHuangKun
  0

• assembly problem

  #208 opened a month ago by yao-chenxin
  2

• db_stat failed, @d84e39c8-130c-4159-bfa9-5393ad703a1a does not exist!

  #206 opened 2 months ago by franztastic
  2

• Timing out on minimap-nd tasks

  #203 opened 3 months ago by wgallin
  4

• Samtools sort out-of-memory

  #176 opened a year ago by RenscoHogers
  2

• How to improve the N50 and reduce contigs numbers?

  #200 opened 3 months ago by cj2jy
  7

• I want to correct ONT with HiFi data

  #204 opened 2 months ago by YouxinZhao
  1

• For low base quality of sequences

  #202 opened 3 months ago by YouxinZhao
  1

• Test won't run

  #201 opened 3 months ago by JWrighty97
  1

• hello , i used the nextdenovo to assemble the ultra large size genome of 23g, the fq only 270g, just want to assemble the grapgh

  #199 opened 4 months ago by Jiangjiangzhang6
  7

• When run nextdenovo with test_data failed

  #198 opened 4 months ago by sumoii
  1

• ctg_align failed

  #197 opened 4 months ago by jjssuuhh
  4

• telomeres getting lost

  #182 opened a year ago by JWDebler
  6

• Question about error rate for correction

  #196 opened 7 months ago by mylena-s
  1

• ERROR：the input data is insufficient for an assembly

  #195 opened 7 months ago by Argonum-Clever2
  3

• Error: db_stat failed ?

  #194 opened 8 months ago by carla-hazelf
  1

• Does NEXTDENOVO filter the contig before output?

  #189 opened 9 months ago by cfz1998
  2

• sort_align step erro

  #188 opened a year ago by ld9866
  1

• No assembly file after running NextDenovo

  #184 opened a year ago by RacheliHadjez
  1

• [4501 ERROR] 2023-06-13 22:29:40 the input data is insufficient for an assembly.

  #183 opened a year ago by Evansd36
  3

• Can I assemble a gap free genome using only regular ONT data?

  #181 opened a year ago by XXH123a
  1

• long time for assemling genome

  #180 opened a year ago by ejlladkw
  6

• TypeError: unsupported operand type(s)

  #179 opened a year ago by ianaebutler
  2

• Unable to run test data on macOS

  #175 opened a year ago by ianaebutler
  4

• Can you run nextDenovo without a config file?

  #178 opened a year ago by JWDebler
  1

• Segmentation fault (core dumped) at 03.ctg_graph/01.ctg_graph.sh.work/ctg_graph0

  #177 opened a year ago by agesantos
  1

• non-zero exit status 137, error info: . - assembly still finishes though

  #174 opened a year ago by JWDebler
  1

• Low performance with highly repeated regions

  #173 opened a year ago by leone93
  1

• NextDenovo Parent Job Failed, No Error, Subtasks still running

  #172 opened a year ago by harveyzac
  1

• about the ParallelTask for the nextdenovo

  #171 opened a year ago by fly005304
  1

• Assembly is running around a month and going strong - or is it stalled?

  #170 opened a year ago by 000generic
  15

• [ERROR] failed to find seq file type or empty file after ctg_graph

  #168 opened a year ago by etd530
  4

• Non-zero exit status 134

  #167 opened a year ago by FabianDK
  2

• Only one sample or multiple samples can be used in nextdenovo?

  #166 opened a year ago by Neo-xbx-00
  1

• What's the difference between -A and -q 10 in nextgraph_options

  #164 opened a year ago by Yutang-ETH
  12

• Error in cns_align1 step

  #165 opened a year ago by lidachuis
  2

• IndexError: list index out of range

  #163 opened a year ago by taotaoyuan
  1

• sh Illegal option -o pipefail

  #160 opened a year ago by bfr42
  3

• Unable to run NextDeVovo on the test data

  #161 opened a year ago by priscilla-glenn
  2

• chimeric mitochondrial-nuclear scaffolds

  #162 opened a year ago by kanchond
  1

• nextgraph floating point exception error

  #159 opened 2 years ago by kanchond
  2

• db_stat failed

  #158 opened 2 years ago by alexvasilikop
  1

• nextgraph Segmentation fault

  #157 opened 2 years ago by tingyang-commits
  1

• no ctg_cns.sh was generated

  #156 opened 2 years ago by jurin0811
  10

• GFA output crashes NexdDenovo even on provided test dataset

  #155 opened 2 years ago by jflot
  5

• Question about how NextDenovo correct raw ONT reads

  #154 opened 2 years ago by Jesson-mark
  2

• segmentation fault after ctg_graph was done

  #153 opened 2 years ago by HippoYI
  10