Pinned Repositories
AluMine
Scripts for discovery and genotyping polymorphic Alu element insertions in human genomes
cRegions
GeneToCN
Gene copy number prediction from k-mer frequencies
GenomeTester4
A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
PhenotypeSeeker
Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains
PlantTaxSeeker
A pipeline to indentify taxon-specific k-mers in plant genomes
PlasmidSeeker
A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
primer3_masker
A sequence masking tool, both Primer3 integrated and standalone variants
StrainSeeker
A bacterial identification program for fast identification of bacterial strains from raw sequencing reads
StrainSeeker2
bioinfo-ut's Repositories
bioinfo-ut/PlasmidSeeker
A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
bioinfo-ut/GenomeTester4
A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
bioinfo-ut/PhenotypeSeeker
Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains
bioinfo-ut/GeneToCN
Gene copy number prediction from k-mer frequencies
bioinfo-ut/AluMine
Scripts for discovery and genotyping polymorphic Alu element insertions in human genomes
bioinfo-ut/PlantTaxSeeker
A pipeline to indentify taxon-specific k-mers in plant genomes
bioinfo-ut/StrainSeeker
A bacterial identification program for fast identification of bacterial strains from raw sequencing reads
bioinfo-ut/cRegions
bioinfo-ut/primer3_masker
A sequence masking tool, both Primer3 integrated and standalone variants
bioinfo-ut/StrainSeeker2
bioinfo-ut/tutorials
Õppetooli töötajatele ja üliõpilastele mõeldud tarkvara kasutamise juhendid
bioinfo-ut/Talendid-Tartusse
bioinfo-ut/Y-mer
Predicting human Y chromosome haplogroups from ultra-low depth sequencing data