License
Copyright (C) 2018 Jianxin Wang(jxwang@mail.csu.edu.cn),Chengqian Lu(chengqlu@csu.edu.cn)
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, see http://www.gnu.org/licenses/.
Jianxin Wang(jxwang@mail.csu.edu.cn),Chengqian Lu(chengqlu@csu.edu.cn) School of Information Science and Engineering Central South University ChangSha CHINA, 410083
Type: Package Title: Predicting human lncRNA-disease associations based on geometric matrix completion
Description: This package implements the GMCLDA algorithm with geometric matrix completion framework, predicting lncRNA-disease associations.
Files: 1.Dataset
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lncRNA-disease.txt stores known lncRNA-disease association information;
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lncRNA.txt and diseases.txt store lncRNA ids and disease ids, respectively;
2.Code
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ADMM_PCG.m: function computing approximation using ADMM (Alternating Direction Method of Multipliers)
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gKernel.m: function computing Gaussian interaction profile kernel;
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GMCLDA_demo.m: predict potential lncRNA-disease associations using geometric matrix completion;
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Laplacian.m : function computing Laplacian matrix;
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prox_nuclearnorm.m: function calculating approximation of nuclearnorm;
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sample_sparse_AtA.m: function sparse sampling
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sample_sparse_t.m: function projecting observed elements
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test_gamma.m: function teting the value of gamma
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vec.m: function serializing