bioinfomaticsCSU

Pinned Repositories

BOSS
A new algorithm for scaffolding
Language:C++9 3 73
BRWMDI
BRWMDI is a computational method to identify potential microbe-disease interactions.
6 4 03
deepsignal
Detecting methylation using signal-level features from Nanopore sequencing reads
Language:Python108 3 8521
LoopPredictor
LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model
Language:Python14 3 14
MAC
Merging assemblies by using adjacency algebraic model and classification
Language:C++22 4 106
MBiRW
Language:MATLAB24 4 38
MEC
Contig Misassembly Correction
Language:Python6 2 22
MultiGuideScan
a multi-processing tool for designing CRISPR guide RNA library
Language:Python4 3 12
MultiMotifMaker
A multi-thread tool for identifying DNA methylation motifs from Pacbio reads
Language:Scala7 5 11
SIMCLDA
Prediction of lncRNA-disease associations based on inductive matrix completion
Language:Matlab20 4 09

bioinfomaticsCSU's Repositories

bioinfomaticsCSU/deepsignal
Detecting methylation using signal-level features from Nanopore sequencing reads
Language:Python108 3 8521
bioinfomaticsCSU/MAC
Merging assemblies by using adjacency algebraic model and classification
Language:C++22 4 106
bioinfomaticsCSU/SIMCLDA
Prediction of lncRNA-disease associations based on inductive matrix completion
Language:Matlab20 4 09
bioinfomaticsCSU/LoopPredictor
LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model
Language:Python14 3 14
bioinfomaticsCSU/BOSS
A new algorithm for scaffolding
Language:C++9 3 73
bioinfomaticsCSU/MultiMotifMaker
A multi-thread tool for identifying DNA methylation motifs from Pacbio reads
Language:Scala7 5 11
bioinfomaticsCSU/BRWMDI
BRWMDI is a computational method to identify potential microbe-disease interactions.
6 4 03
bioinfomaticsCSU/MEC
Contig Misassembly Correction
Language:Python6 2 22
bioinfomaticsCSU/MultiGuideScan
a multi-processing tool for designing CRISPR guide RNA library
Language:Python4 3 12
bioinfomaticsCSU/SCOP
A novel scaffolding algorithm based on contig classification and optimization
Language:C++4 3 22
bioinfomaticsCSU/DMFCDA
Deep matrix factorization improves prediction of human circRNA-disease associations
Language:Python3 2 04
bioinfomaticsCSU/CMLDR
A novel drug repositioning computational method
Language:Python2 3 05
bioinfomaticsCSU/iLSLS
A Novel Scaffolding Algorithm Based on Contig Error Correction and Path Extension
Language:C++2 3 21
bioinfomaticsCSU/EPGA2
A New Assembler
Language:C++1 2 4
bioinfomaticsCSU/GapReduce
Gap Filling Tool
Language:C++1 3 1
bioinfomaticsCSU/GMCLDA
Language:MATLAB1 2 01
bioinfomaticsCSU/PESM
PESM: predicting the essentiality of miRNAs based on gradient boosting machines and sequences
Language:Python1 2 0
bioinfomaticsCSU/RepAHR
Language:Java1 2 01
bioinfomaticsCSU/REQUEST
REQUEST is a novel REad QUality Evaluation and Selection Tool (REQUEST) for evaluating the quality of third generation long reads.
Language:Python1 2 0
bioinfomaticsCSU/ARC
Improving de novo assembly based on reads classification
Language:Java2 0
bioinfomaticsCSU/bedtools2
bedtools - the swiss army knife for genome arithmetic
Language:C1 0
bioinfomaticsCSU/ChIAPoP
ChIAPoP: A integrated tool for ChIA-PET data analysis
1 0
bioinfomaticsCSU/CLRS
📚 Solutions to Introduction to Algorithms Third Edition
Language:Markdown1 0
bioinfomaticsCSU/EPGA-SC
EPGA-SC : A framework for de novo assembly of single-cell sequencing reads
Language:C2 0
bioinfomaticsCSU/FitHiChIP
Statistically Significant loops from HiChIP data
Language:R1 0
bioinfomaticsCSU/GET
Gap-filling Evaluation Tool
Language:C2 01
bioinfomaticsCSU/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Language:Java1 0
bioinfomaticsCSU/NetL_DDI
1 01
bioinfomaticsCSU/PE-Trimmer
An efficient trimming algorithm based on multi-feature fusion scoring model for NGS data
Language:Java2 0
bioinfomaticsCSU/pip
The Python package installer
Language:Python1 0