bioinformatics-centre/BayesTyper

Issues

• Data Bundle for GRCh37?

  #57 opened 2 months ago by wesleyau
  0

• downloading variation priors fails

  #48 opened 2 years ago by shokrof
  4

• error with bayesTyper cluster

  #56 opened 3 months ago by zhengluo-lz
  0

• Is it necessary to use the aligned BAM file to calculate k-mer in GENOTYPE stage?

  #55 opened 3 months ago by GouZiHui
  0

• Genotyping SVs from Different Callers

  #54 opened 4 months ago by Lukecassar21
  0

• With bayestyper genotyping SV, the genotype rate decreases as the depth of sample sequencing increases.

  #53 opened 8 months ago by yangqimeng99
  0

• If executed multiple times, will the result of the data generated be the same each time?

  #52 opened 2 years ago by 123xyl
  5

• genotype failed: Assertion `parameters.first > 0' failed.

  #50 opened 2 years ago by Jesson-mark
  3

• What is the open source protocol for bayesTyper?

  #51 opened 2 years ago by 123xyl
  1

• how to generate test cases

  #49 opened 2 years ago by 123xyl
  0

• Questions on data bundle and SV genotyping

  #46 opened 2 years ago by Han-Cao
  1

• how to get test case

  #47 opened 2 years ago by 123xyl
  0

• Classifying kmers error with bayesTyper 1.4.1 and 1.5

  #45 opened 2 years ago by karenfeng
  1

• how to run bayestyper

  #44 opened 2 years ago by 123xyl
  2

• Where are the test cases

  #43 opened 2 years ago by 123xyl
  1

• when cmake, Could NOT find Boost (missing: Boost_INCLUDE_DIR iostreams program_options system filesystem serialization)

  #42 opened 2 years ago by 123xyl
  1

• ChildIOException: File/directory is a child to another output

  #29 opened 5 years ago by Parsoa
  9

• Identifying SV type from output

  #41 opened 3 years ago by janawold1
  1

• A question about VCF format of results from the 'genotype' function.

  #40 opened 3 years ago by zhiyongli1995
  1

• Genotyping for the inversions

  #39 opened 3 years ago by shehongbing
  2

• [feature request] Genotyping more than 500 samples

  #34 opened 4 years ago by Sherry520
  3

• Genotyping 500 samples

  #38 opened 4 years ago by Sherry520
  0

• Questions about bayesTyperTools combine

  #37 opened 4 years ago by zhiyongli1995
  4

• Question of the format of VCF file for BayesTyper.

  #35 opened 4 years ago by zhiyongli1995
  2

• A question about convertAllele.

  #36 opened 4 years ago by zhiyongli1995
  0

• byesTyper cluster wrong

  #33 opened 4 years ago by masen1991
  4

• Error during combine of Manta SV sites

  #26 opened 5 years ago by jjfarrell
  5

• Assertion error when run bayesTyper cluster

  #23 opened 5 years ago by qingyun-mei
  1

• SV Typing only

  #18 opened 5 years ago by jjfarrell
  4

• Running BayesTyper on custom VCF file

  #32 opened 5 years ago by Parsoa
  11

• manta_run_workflow fails with Unexpected character in reference sequence.

  #31 opened 5 years ago by Parsoa
  0

• terminate called after throwing an instance of 'std::out_of_range'

  #30 opened 5 years ago by Parsoa
  4

• Feature Request- Add in gnomAD SV call set to prior

  #27 opened 5 years ago by jjfarrell
  1

• Feature Request for prior vcf with bayesTyperTools combine

  #25 opened 5 years ago by jjfarrell
  1

• Combine assertion error

  #28 opened 5 years ago by jjfarrell
  1

• Cram Support?

  #24 opened 5 years ago by jjfarrell
  2

• how to prepare canon.fa and decoy.fa for non-human organism?

  #22 opened 5 years ago by qingyun-mei
  2

• Assertion `genome_seqs_it != genome_seqs.end()' failed.

  #21 opened 5 years ago by jjfarrell
  6

• Genotyping error on one cluster

  #20 opened 5 years ago by jjfarrell
  3

• ConvertAllele and Variant normalization

  #19 opened 5 years ago by malmarri
  3

• Genotyping assertion failure

  #16 opened 5 years ago by prithikasritharan
  6

• bayestyper cluster assertion failure

  #17 opened 5 years ago by cheesemania
  2

• error bayestyper cluster

  #14 opened 6 years ago by Jordi-V
  31

• Running BayesTyper with a different kmer length

  #15 opened 6 years ago by stephaniemyan
  1

• Classifying kmers error with bayesTyper genotype

  #13 opened 6 years ago by stephaniemyan
  2

• Error with bayesTyperTools combine

  #11 opened 6 years ago by stephaniemyan
  3

• genotyping error: intercluster_diploid_kmer_stats.at(sample_idx).at(bias _idx).front().getCount() == 0

  #12 opened 6 years ago by biobai
  1

• Genotyping 808 samples

  #10 opened 6 years ago by Jordi-V
  3

• filtering on merged samples

  #9 opened 6 years ago by cheesemania
  1

• added "*" in ALT after genotyping

  #8 opened 6 years ago by songtaogui
  1