bioinformatics-ptp/detectRUNS

Issues

• error in mice algorithm

  #45 opened 4 months ago by mehrdad123qaderi
  1

• Combine chromosomes with plot stacked runs

  #47 opened 4 months ago by tori-rudolph
  1

• Why the result of Froh_genome be the same as the result of Froh_Class_0 for each individual?

  #44 opened 9 months ago by ChaoXu1997
  3

• Get version 0.9.7

  #43 opened a year ago by biojiangke
  2

• :bug: plot_Distribution report wrong labels with classes based mean graphs

  #41 opened 2 years ago by bunop
  0

• plot_Runs saves an empty pdf with current R version

  #13 opened 2 years ago by bunop
  1

• Warning in plot_InbreedingChr: `<scale>` argument of `guides()` cannot be `FALSE`

  #39 opened 2 years ago by bonifazi
  2

• plot_Runs() returns nothing. And empty file when asked to save the plot

  #38 opened 2 years ago by Somatogenomics
  7

• plotRuns produces an unreadble file.pdf

  #37 opened 2 years ago by matteomaster
  2

• Error in .rowNamesDF<-(x, value = value) : invalid 'row.names' length

  #36 opened 2 years ago by Integratedhaplotypescore
  2

• plot_SnpsInRuns and plot_manhattanRuns plotting all SNPs as 100%

  #25 opened 4 years ago by victorialindsay
  8

• Error when running tableRuns function

  #35 opened 2 years ago by alanaselli
  4

• Running detectRUNS in draft assemblies

  #34 opened 3 years ago by micadiz
  1

• :zap: refactor tableRuns to better manage memory

  #31 opened 3 years ago by bunop
  0

• snpInsideRunsCpp(runsChrom, mapKrom, genotypeFile) : Not compatible with requested type: [type=character; target=integer]

  #33 opened 3 years ago by aigulsharip
  5

• :wrench: manage packages in project using renv

  #30 opened 3 years ago by bunop
  0

• snpInsideRuns mustn't be called with more than one chromosome

  #19 opened 3 years ago by bunop
  0

• Error on slidingRUNS.run() Number of markers differ in mapFile and genotype: are those file the same dataset?

  #9 opened 3 years ago by Dharmendra-G-1
  3

• refactor chromosome input types in snpInsideRunsCpp

  #11 opened 3 years ago by bunop
  0

• Error in snpInsideRuns, even after fix

  #18 opened 3 years ago by cbossu
  4

• :construction_worker: upgrade CI configuration files

  #26 opened 3 years ago by bunop
  0

• Error in names(x) <- value : 'names' attribute [2] must be the same length as the vector [1]

  #23 opened 4 years ago by kumarsaurabh20
  2

• Allow extra chromosomes in map files

  #24 opened 4 years ago by bunop
  0

• Customizing plots

  #22 opened 4 years ago by samarth8392
  2

• Improve summaryRuns description

  #17 opened 5 years ago by mgb1985
  2

• return mean values and standard error/deviation

  #16 opened 5 years ago by scisea
  2

• Deal with tab-separated ped files

  #10 opened 5 years ago by bunop
  1

• Function readPOPCpp() doesn't work with tab-separated input ped file

  #15 opened 5 years ago by filippob
  3

• Lower package size as described when checking package

  #14 opened 5 years ago by bunop
  0

• error in plot_SnpsInRuns()

  #7 opened 5 years ago by jenbaltzegar
  5