Pinned Repositories
ancestry
AngularJS module with interactive lineage chart components based on D3.js
cameo
cameo - computer aided metabolic engineering & optimization
croissance
Tool for estimating growth rates from microbial growth curves
goodbye-genbank
A Python package for Biopython that gives feature annotations from GenBank records a new and better life
Maud
Enzyme models that take into account kinetics, allostery and thermodynamics
potion
Flask-Potion is a RESTful API framework for Flask and SQLAlchemy, Peewee or MongoEngine
pyOpenMS_UmetaFlow
Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)
shu
Multi-dimensional, trans-omics metabolic maps.
snakemake_UmetaFlow
Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
venom
A transport-agnostic RPC framework for Python
DTU Biosustain's Repositories
biosustain/2016-09-05-software-carpentry
biosustain/protov
Bounds checking and other validation for Protocol Buffers in Python
biosustain/gnomic-phylogeny
A Node.js package for making phylogenetic trees from gnomic genotypes
biosustain/neighbor-joining
Rapid Neighbor-Joining phylogenetic tree creation method implementation for Node.js
biosustain/polyplot
A wrapper for our favorite python plotting libraries that makes high-quality plots of common data.
biosustain/goodbye-genbank
A Python package for Biopython that gives feature annotations from GenBank records a new and better life
biosustain/genomediff-node
GenomeDiff (*.gd) file parser for Node.js
biosustain/microplate
A Node.js package for working with tables and plate layouts loaded from Excel (XLSX).
biosustain/MuSIC-PDO-3HP
Supplementary materials for "Multiscale Analysis of the Sustainable Production of 1,3-PDO and 3HP"
biosustain/ipython_notebook_utils