This is a companion repository to the GLEAMS deep learning MS/MS spectrum embedder.
For more information, see the official GLEAMS code website.
If you use GLEAMS in your work, please cite the following publication:
- Wout Bittremieux, Damon H. May, Jeffrey Bilmes, William Stafford Noble. A learned embedding for efficient joint analysis of millions of mass spectra. bioRxiv (2021). doi:10.1101/483263
See the installation instructions on the official GLEAMS code website.
Use the following installation command to include all additional dependencies needed to run the notebooks during GLEAMS installation:
pip3 install git+https://github.com/bittremieux/GLEAMS.git#egg=gleams[notebook]