Pinned Repositories
ANN-SoLo
Spectral library searching using approximate nearest neighbor techniques.
cosine_neutral_loss
drugs_epidermis
falcon
Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
GLEAMS
GLEAMS is a Learned Embedding for Annotating Mass Spectra.
gnps_suspect_library
Nearest neighbor suspect spectral library for untargeted metabolomics.
komidabot
A Slack chat bot to request the daily menu at the komida restaurants of the University of Antwerp.
spectrum_utils
Python package for efficient mass spectrometry data processing and visualization
TCR-Classifier
Classifier to determine CD8+ T-cell receptor characteristics underlying peptide recognition.
casanovo
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
bittremieux's Repositories
bittremieux/spectrum_utils
Python package for efficient mass spectrometry data processing and visualization
bittremieux/ANN-SoLo
Spectral library searching using approximate nearest neighbor techniques.
bittremieux/falcon
Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
bittremieux/GLEAMS
GLEAMS is a Learned Embedding for Annotating Mass Spectra.
bittremieux/TCR-Classifier
Classifier to determine CD8+ T-cell receptor characteristics underlying peptide recognition.
bittremieux/cosine_neutral_loss
bittremieux/komidabot
A Slack chat bot to request the daily menu at the komida restaurants of the University of Antwerp.
bittremieux/gnps_suspect_library
Nearest neighbor suspect spectral library for untargeted metabolomics.
bittremieux/drugs_epidermis
bittremieux/feedly-unread
Userscript to place the Feedly unread count in the favicon and title bar
bittremieux/qc_analysis
Workflow to analyze the quality of mass spectrometry proteomics experiments based on multivariate quality control metrics.
bittremieux/ypic_challenge_2018
YPIC challenge 2018 data analysis
bittremieux/GLEAMS_notebooks
GLEAMS is a Learned Embedding for Annotating Mass Spectra.
bittremieux/sars_cov_2
Computational analysis of SARS-CoV-2 virus-host protein-protein interactions
bittremieux/crocosphaera_watsonii_wh_8501
bittremieux/cv
bittremieux/emp500
bittremieux/falcon_notebooks
Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
bittremieux/foodomics
bittremieux/GNPS_GC
bittremieux/iMonDB
Tool suite to automatically extract, store, manage, and visualize mass spectrometer instrument parameters from raw data files.
bittremieux/jqcML
Java API for the standard qcML file format for mass spectrometry quality control data.
bittremieux/pharmaceuticals_exposure
bittremieux/proteomics_data_mining_challenge
bittremieux/qc_tools_review
Classifier to evaluate the performance of various types of quality information in discriminating low-quality from high-quality experiments.
bittremieux/review_proteomics_id_2023_jpr
bittremieux/smart-lab
Environment monitoring for mass spectrometry quality control: Towards the smart lab
bittremieux/suspects_inspection
bittremieux/systemwide_ms