bittremieux/spectrum_utils
Python package for efficient mass spectrometry data processing and visualization
PythonApache-2.0
Issues
- 1
Cross-link spectra annotation
#69 opened by jstrobaek - 3
annotate using custom fragment list
#58 opened by samcphee - 0
Lark-Cython for faster grammar parsing
#67 opened by bittremieux - 2
Matplotlib Version
#55 opened by mwang87 - 1
function: noise peak removal
#53 opened by danyunghsu - 2
Update GNPS USI resolver to GNPS2
#52 opened by bittremieux - 0
Deprecated dependency
#62 opened by jspaezp - 0
Update XLMOD location
#63 opened by bittremieux - 4
- 1
- 1
Can't successfully plot an annotated spectrum
#57 opened by wsnoble - 2
Manual fragment annotation (in version 0.4.2)
#56 opened by ch4perone - 2
ValueError: Unknown precursor m/z from USI. Specify the precursor m/z directly.
#54 opened by chinmayaNK22 - 2
- 15
Annotated sequence peptide string
#24 opened by jspaezp - 3
Alternative dependency for fastobo?
#40 opened by wfondrie - 0
Version when installing using conda
#38 opened by bittremieux - 0
Urlencode USI
#43 opened by bittremieux - 1
Unable to install in python 3.11
#44 opened by irleader - 0
Fix annotation of fragments with isotopic peaks
#45 opened by issararab - 4
- 1
- 0
Integration with IO packages
#39 opened by bittremieux - 1
loading spectrum by usi can't find m/z
#37 opened by wsnoble - 1
how to import mass data pymzml package
#36 opened by jianghudaoshi - 3
Milestones for next release
#33 opened by jspaezp - 0
Add ProForma documentation
#28 opened by bittremieux - 7
annotate_peptide_fragments() got an unexpected keyword argument 'neutral_losses'
#30 opened by Seb-Leb - 1
Annotating precursor peak.
#31 opened by jopoehls - 0
Document pyteomics cmass
#22 opened by bittremieux - 0
Provide contributing guidelines
#27 opened by bittremieux - 1
Support Python 3.10
#29 opened by bittremieux - 0
Empty spectrum plotting
#20 opened by bittremieux - 0
M1 Mac installation
#34 opened by jspaezp - 0
- 2
- 1
- 1
ProForma Annotation
#18 opened by mwang87 - 2
- 2
- 0
Peptide annotating neutral losses
#16 opened by mwang87 - 3
Suggestion to make RDkit dependency optional
#14 opened by RalfG - 2
- 2
Butterfly Plot
#13 opened by BenSamy2020 - 1
More detailed document and examples
#12 opened by hcji - 1
- 1
Support Python 3.8
#10 opened by bittremieux - 3
rdkit dependency not installed
#9 opened by lgatto - 2
Peak(s) not annotated within correct ppm
#8 opened by gpdann - 2
numba version issue
#7 opened by oliveralka