Pinned Repositories
2016-01-30-UofArizonaIntroPython
2017-02-25-CyVerse
2019-02-23-WorkshopResources
2020_February_Bash_Python
2021-02-25_IntroPython_dataanalysis_viz
cyverse_machine_learning
A repository to document all the setup, code, commands, and workflow to leverage GPUs for machine learning. The ultimate goal is to leverage GPUs from CyVerse BisQue, both local GPUs and remote GPUs on other platforms like XSEDE, TACC, etc.
Journey_to_the_Compute
Two day hands-on workshop for Docker, Singularity, and leveraging HPC and cloud resources.
SynMapFractBiasAnalysis
Fractionation bias analysis tool for investigating whole genome duplication gene loss.
titanic_data_exploration
Workshop Jupyter Notebooks for Data Carpentry Workshop
UAB_IntrotoPython_Analysis_Vis
bjoyce3's Repositories
bjoyce3/CyVerse_SciTeam_ECP_Template
bjoyce3/SynMapFractBiasAnalysis
Fractionation bias analysis tool for investigating whole genome duplication gene loss.
bjoyce3/Intro_Data_Management_Image_Analysis_BisQue
bjoyce3/sci-f.github.io
The Scientific Filesystem Specification and Documentation
bjoyce3/container_camp_workshop_2018
bjoyce3/container_camp_example
bjoyce3/resbaz2018
Website for ResBaz 2018 (a polymer-based rewrite of previous websites)
bjoyce3/cyverse_machine_learning
A repository to document all the setup, code, commands, and workflow to leverage GPUs for machine learning. The ultimate goal is to leverage GPUs from CyVerse BisQue, both local GPUs and remote GPUs on other platforms like XSEDE, TACC, etc.
bjoyce3/SimPrily_DE_HTfile_Setup_App
This app will setup a high-throughput files on the CyVerse Discovery Environment for running the SimPrily workflow for a user defined number of times (e.g. 1000 SimPrily simulations).
bjoyce3/SimPrily_DE_Concatenate_Output
This app will complete the third step in the SimPrily DE workflow and concatenate all output files into a single file for analysis and assessment.
bjoyce3/SimPrily
bjoyce3/Advanced_Visualization
A repo of all the education, outreach, and training efforts associated with advanced, interactive visualizations. Also contains code and data for executing advanced visualizations.
bjoyce3/minimum-viable-ipsum
A tool for generating success/failure and continual learning placeholder text
bjoyce3/SWC_hlt_2017-09-09
SWC repo for HLT NLP human words Linguistics
bjoyce3/Jupytercon2017_Notes
Notes and code from Jupytercon 2017 in NYC
bjoyce3/workshop-template
Template for workshop websites.
bjoyce3/Journey_to_the_Compute
Two day hands-on workshop for Docker, Singularity, and leveraging HPC and cloud resources.
bjoyce3/CyVerse_Science_Informatician_Deliverables
bjoyce3/Read_vs_LSSTtheDocs_Mozilla_Sprint_2017
Tina Lee and Blake Joyce testing out LSSTtheDocs and ReadtheDocs for the Cyverse documentation update.
bjoyce3/SWC_R_Summary_Script
bjoyce3/RNAseqVisualizationTools
Docker container for downstream tools for visualization of RNA-seq analysis.
bjoyce3/2017-02-25-CyVerse
bjoyce3/Image_Data_rapid_QAQC
A repo to intake image data from UAVs, phenomics tractors, rovers, etc and rapidly assess whether a run is successful in the field.
bjoyce3/SDSC_summer_institute_2016_Joyce
Code from the San Diego Supercomputing Center Summer Institute
bjoyce3/datasets
CSV datasets used in Plotly API examples
bjoyce3/6_12_2016_Software_Carpentry
Code associated with Software Carpentry Workshop June 12, 2016. Make this really descriptive.
bjoyce3/CyVerse_Code
Bash scripts to install Atmosphere/Jetstream images
bjoyce3/Curriculum_vitae
The curriculum vitae of Blake Joyce, PhD
bjoyce3/2016-01-30-UofArizonaIntroPython
bjoyce3/Software_Carpentry
Software carpentry class repo (R -> Shell -> Git -> R/Atmosphere)