Pinned Repositories
2016-01-30-UofArizonaIntroPython
2017-02-25-CyVerse
2019-02-23-WorkshopResources
2020_February_Bash_Python
2021-02-25_IntroPython_dataanalysis_viz
cyverse_machine_learning
A repository to document all the setup, code, commands, and workflow to leverage GPUs for machine learning. The ultimate goal is to leverage GPUs from CyVerse BisQue, both local GPUs and remote GPUs on other platforms like XSEDE, TACC, etc.
Journey_to_the_Compute
Two day hands-on workshop for Docker, Singularity, and leveraging HPC and cloud resources.
SynMapFractBiasAnalysis
Fractionation bias analysis tool for investigating whole genome duplication gene loss.
titanic_data_exploration
Workshop Jupyter Notebooks for Data Carpentry Workshop
UAB_IntrotoPython_Analysis_Vis
bjoyce3's Repositories
bjoyce3/UAB_IntrotoPython_Analysis_Vis
bjoyce3/2021-02-25_IntroPython_dataanalysis_viz
bjoyce3/titanic_data_exploration
Workshop Jupyter Notebooks for Data Carpentry Workshop
bjoyce3/2019-02-23-WorkshopResources
bjoyce3/2020_February_Bash_Python
bjoyce3/BisQue_Platform_Guide
bjoyce3/cereus
proposal for data storage
bjoyce3/container-structure-test
validate the structure of your container images
bjoyce3/data_analysis_pipeline
Data analysis pipeline with dada2
bjoyce3/Distributed_data_benchmarking
Code to benchmark distributed data protocols, systems, and everything thing else. Started for the 2019 IPFS Camp.
bjoyce3/fly-nextcloud
A Nextcloud Deployment & Management System for Fly.io
bjoyce3/fly-restic
Backup Any Rclone Remote to Another Using Restic on Fly.io
bjoyce3/Goat_Path_Git_Lesson
It's the miminum viable git lesson for researchers, also known as the "Goat Path Git." The Oxford definition of goat path is: A (narrow) path or track, especially on a hillside or mountain, such as is made by goats. Here we take a narrow path in describing Git that is useful for beginning research coders.
bjoyce3/IPEDS_DATA
bjoyce3/JupyterNotebookLogger
bjoyce3/PlanteomeDeepSegment_0.1
bjoyce3/registry
The Core Registry of Container Blueprints for the Autamus Build System
bjoyce3/ResBazTutorialGit
2020 tutorial
bjoyce3/researcher_facing_readthedocs
The repository for UAB Research Computing researcher facing read the docs. https://bjoyce-researcher-facing-readthedocs.readthedocs.io/en/latest/
bjoyce3/researchsoftware.org
International RSE website
bjoyce3/rse-phenotypes
Contribute your Research Software Engineer (RSE) phenotype!
bjoyce3/Scratch
bjoyce3/singolang
Singularity wrapper in Go
bjoyce3/singularity-container-test
A workflow for structure testing of singularity containers
bjoyce3/UA_HPC_University_Metrics_Dashboard
A repository to create an automatic dashboard for HERD, IPEDS, and University of Arizona-specific metrics.
bjoyce3/uabrc.github.io
UAB Research Computing Documentation
bjoyce3/UAFijiSegmentation
Repo for code used on UA HPC to segment 3d confocal data in FIJI
bjoyce3/usrse.github.io
US RSE umbrella web page
bjoyce3/WHOI_MOM5_Docker
Container for deploying the Modular Ocean Model 5 (MOM5) ESM2M model on the WHOI HPC Poseidon.
bjoyce3/workshop-tools