blackrim/treePL

Issues

• Failed setting feasible start rates/dates after 10 attempts. Aborting.

  #63 opened 10 months ago by Puguang-Zhao
  8

• The root time is biased towards the maximum time of the fossil which calibrated to the root.

  #65 opened 6 months ago by XuWeiEvo
  3

• how to choose the best smoothing from treePL

  #22 opened 7 months ago
  2

• How drive treePL to estimate divergence time under strict global clock model?

  #21 opened 7 months ago by CalamusLiber
  4

• checks for constraints

  #17 opened 7 months ago by josephwb
  1

• Installation issues

  #67 opened 9 months ago by kldxgg
  1

• Large variation among different replicates but with same parameters

  #66 opened 9 months ago by XuWeiEvo
  0

• How to call treePL ??

  #61 opened 3 years ago by Galaxy-228
  11

• Treepl+RaxML replicate trees

  #56 opened a year ago by carolinaamg
  1

• failures to converge, what to do in general?

  #16 opened a year ago by rvosa
  13

• seqfaults on quoted names

  #39 opened a year ago by josephwb
  0

• Writing a for loop for treepl?

  #52 opened a year ago by dylanHco
  2

• Is there a license?

  #60 opened a year ago by james-vincent
  1

• Segmentation fault (core dumped) when using prime

  #62 opened 2 years ago by intactcircle
  0

• What exactly does "linear search failed" mean in terms of tree quality?

  #49 opened 5 years ago by jamiethompson77
  4

• Estimating substitution rates

  #33 opened 7 years ago by burbrink
  2

• R script to check consistency of calibrations for 100 large trees (~3,000 taxa)?

  #59 opened 3 years ago by Belinda333
  22

• CV hanging

  #51 opened 4 years ago by tle003
  1

• How to reduce the number of constraints

  #31 opened 5 years ago by LuaBgd
  3

• treePL not following age calibrations

  #58 opened 3 years ago by jbernst
  4

• Installation problem

  #57 opened 3 years ago by francicco
  0

• Problem with mrca and tiny branch length at internal node.

  #55 opened 4 years ago by BiodeB
  1

• Unstable smooth values

  #50 opened 4 years ago by kjlmaurin
  0

• How to run treePL?

  #46 opened 5 years ago by kjlmaurin
  3

• treepl: command not found

  #54 opened 4 years ago by BiodeB
  1

• Updated Mac install with homebrew

  #20 opened 6 years ago by jonchang
  22

• Confidence Intervals: Bayesian vs ML

  #53 opened 4 years ago by dylanHco
  0

• segmentation fault

  #48 opened 5 years ago by EduardoFdzOrt
  2

• Tree is invalid: missing concluding semicolon

  #47 opened 5 years ago by kjlmaurin
  7

• Is this project still being maintained?

  #38 opened 5 years ago by tseemann
  7

• announcement: docker treePL

  #41 opened 5 years ago by rvosa
  1

• configure does not honour options specified

  #43 opened 5 years ago by josephwb
  5

• Failed adolc compilation, ubuntu 16.04

  #35 opened 5 years ago by TristanLefebure
  2

• treePL not working properly

  #37 opened 5 years ago by gavrucent
  3

• How to run the "wiggle" option mentioned in the paper?

  #44 opened 5 years ago by anhong11
  1

• calculating without gradient (might want to try a different optad=VALUE)

  #34 opened 7 years ago by stubbsrl
  1

• Meaning of numsites

  #42 opened 5 years ago by coyotree
  2

• Calibration points missing node bars

  #40 opened 6 years ago by coyotree
  1

• Node bars

  #30 opened 7 years ago
  10

• error in installation

  #36 opened 7 years ago by zhaonanhd
  0

• Prime: "Linear search failed" concerns

  #32 opened 7 years ago by coyotree
  0

• Node ages

  #28 opened 7 years ago
  12

• Quick question : is there a linux version of TreePL ?

  #29 opened 7 years ago by LuaBgd
  3

• MRCA

  #26 opened 7 years ago
  12

• stem vs crown

  #25 opened 7 years ago by stubbsrl
  1

• Run command

  #27 opened 7 years ago
  0

• Configuration of adolc

  #23 opened 8 years ago by TomCarr
  1

• Estimating error around dates?

  #24 opened 8 years ago by burbrink
  8

• treePL with Mac OS 11.1

  #18 opened 9 years ago by Latastia
  8

• crashes more often than not

  #15 opened 10 years ago by rvosa
  4