blackrim

blackrim's Stars

• LunarVim/LunarVim

  🌙 LunarVim is an IDE layer for Neovim. Completely free and community driven.

  Language:Lua18.1k1.5k

• orsinium-labs/svg.py

  🎨 Type-safe and powerful Python library to generate SVG files

  Language:Python25914

• Gene-Weaver/FieldPrism

  FieldPrism curates field images by correcting image distortion, converting pixel distance to metric, and renaming files based on QR codes.

  Language:Python5

• computations/lagrange-ng

  The next generation of lagrange

  Language:C++6

• ffi/ffi

  Ruby FFI

  Language:Ruby2.1k334

• mrkn/matplotlib.rb

  matplotlib wrapper for Ruby

  Language:Ruby9010

• marp-team/marp

  The entrance repository of Markdown presentation ecosystem

  Language:TypeScript7.6k137

• tomopfuku/phylojulia

  Phylogenetics and bioinformatics in the Julia language

  Language:Julia1

• BortEdwards/DatabaseTaxonCoverage

  1

• fisadev/conky-draw

  Easily create beautiful conky graphs and draws

  Language:Lua14326

• zamanlh/AvidaConfigs

  A place to store various configs I use and share often

  5

• mossmatters/phyloscripts

  Helper scripts for processing and visualization of phylogenetics datasets

  Language:Jupyter Notebook2514

• gonum/gonum

  Gonum is a set of numeric libraries for the Go programming language. It contains libraries for matrices, statistics, optimization, and more

  Language:Go7.5k536

• Martinsos/edlib

  Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

  Language:C++505164

• smirarab/pasta

  PASTA (Practical Alignment using SATe and Transitivity)

  Language:Python8325

• chinchliff/physcripts

  Python scripts (and a few non-python) that have come in handy for various phylogenetics-related tasks

  Language:Python66

• jmschrei/yahmm

  Yet Another Hidden Markov Model repository.

  Language:Python24932

• macroevolution/bamm

  A program for multimodel inference on speciation and trait evolution

  Language:C++3310

• OpenTreeOfLife/gcmdr

  Graph of Life Commander

  Language:Python33

• arborworkflows/WorkflowGUI

  Allow users to visually lay out Arbor workflows.

  Language:Python4

• arborworkflows/ArborWebApps

  A bundle of Tangelo applications used by NSF Arbor (Phylogenetic Comparative Methods system)

  Language:JavaScript91

• arborworkflows/ProjectManager

  Application prototype to upload datasets into Arbor, create new projects, and organize source data.

  Language:Python31

• arborworkflows/Visomics

  ARBOR Revolutionary Workflows for the Tree of Life.

  Language:C++31

• fizquierdo/perpetually-updated-trees

  Language:Ruby155

• FePhyFoFum/phyx

  phylogenetics tools for linux (and other mostly posix compliant) computers

  Language:C++11117

• OpenTreeOfLife/treemachine

  Source tree graph database

  Language:Java166

• OpenTreeOfLife/big-tree-collection-simulator

  simulator of collections of trees that are based on a classification with stochastic errors introduced

  Language:C++21

• blackrim/treePL

  Phylogenetic penalized likelihood

  Language:C++4519

• aberer/RogueNaRok

  A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf stability index and taxonomic instability index

  Language:C217

• blackrim/phydl

  just a test of the d programming language and phylogenetics

  1