blakesweeney

Project leader for RNA Resources at the EBI leading @RNAcentral and @Rfam

EMBL-EBI

Pinned Repositories

dissertation
My dissertation
Language:PostScript1 3 00
GG2Fasta
Turn greengenes format into Fasta+JSON
Language:Python2 3 00
git-helpers
Some random scripts I use with git
Language:Shell0 3 00
infer-rfamy-rna-types
Some work to figure out how to improve the inference of RNA types from Rfam
Language:Python0 4 00
rna2d.js
Display RNA 2D structures with d3.js
Language:JavaScript40
Ruby-Webmachine-Mongrel2
Use Ruby-Webmachine with Mongrel2
Language:Ruby3 3 00
sup_tag
Make tagging messages in sup easy.
Language:Ruby4 3 00
Temperature-Variations
Site for my lab to look at temperature variation data
Language:JavaScript1 3 00
unite-taskwarrior
A unite.vim interface to taskwarrior
Language:VimL6 4 552
zshkit
My way-overdone zsh config scripts
Language:Shell10

blakesweeney's Repositories

blakesweeney/unite-taskwarrior
A unite.vim interface to taskwarrior
Language:VimL6 4 552
blakesweeney/rna2d.js
Display RNA 2D structures with d3.js
Language:JavaScript40
blakesweeney/sup_tag
Make tagging messages in sup easy.
Language:Ruby4 3 00
blakesweeney/Ruby-Webmachine-Mongrel2
Use Ruby-Webmachine with Mongrel2
Language:Ruby3 3 00
blakesweeney/GG2Fasta
Turn greengenes format into Fasta+JSON
Language:Python2 3 00
blakesweeney/dissertation
My dissertation
Language:PostScript1 3 00
blakesweeney/rfam-vs-pfam
Comparing Rfam and Pfam
Language:R1 3 00
blakesweeney/Temperature-Variations
Site for my lab to look at temperature variation data
Language:JavaScript1 3 00
blakesweeney/zshkit
My way-overdone zsh config scripts
Language:Shell10
blakesweeney/git-helpers
Some random scripts I use with git
Language:Shell0 3 00
blakesweeney/infer-rfamy-rna-types
Some work to figure out how to improve the inference of RNA types from Rfam
Language:Python0 4 00
blakesweeney/missing-rfam-hits
Repo to try and map missing PDB hits to the correct Rfam family
Language:Python3 0
blakesweeney/new-db-flow
Tool to add help new ref DB to RNAcentral's db
Language:Mustache3 0
blakesweeney/nixpkgs
Nix Packages collection
Language:Nix2 0
blakesweeney/official-images
Primary source of truth for the Docker "Official Images" program
Language:Shell3 0
blakesweeney/prelims
Answers to my prelims
Language:TeX3 0
blakesweeney/r2dt-utils
Some utilities for RNAcentral to work with R2DT results
Language:Rust3 0
blakesweeney/rat
Compose shell commands to build interactive terminal applications
blakesweeney/residue-ordering
Compute ordering of residues in a PDB file
Language:Python3 0
blakesweeney/rfutil
A very experimental grab bag of Rfam related utilities in rust
Language:Rust
blakesweeney/rkv
A simple, humane, typed Rust interface to LMDB.
Language:Rust2 0
blakesweeney/rnc-utils
Some utilities for the RNAcentral pipeline, mostly experimental now
Language:Rust
blakesweeney/sub
a delicious way to organize programs
Language:Shell
blakesweeney/superposition
Superimposing 3D structure fragments
Language:JavaScript3 0
blakesweeney/VimCompletesMe
You don't Complete Me; Vim Completes Me! A super simple, super minimal, super light-weight tab completion plugin for Vim.
Language:Vim Script2 0

blakesweeney

Pinned Repositories

dissertation

GG2Fasta

git-helpers

infer-rfamy-rna-types

rna2d.js

Ruby-Webmachine-Mongrel2

sup_tag

Temperature-Variations

unite-taskwarrior

zshkit

blakesweeney's Repositories

blakesweeney/unite-taskwarrior

blakesweeney/rna2d.js

blakesweeney/sup_tag

blakesweeney/Ruby-Webmachine-Mongrel2

blakesweeney/GG2Fasta

blakesweeney/dissertation

blakesweeney/rfam-vs-pfam

blakesweeney/Temperature-Variations

blakesweeney/zshkit

blakesweeney/git-helpers

blakesweeney/infer-rfamy-rna-types

blakesweeney/missing-rfam-hits

blakesweeney/new-db-flow

blakesweeney/nixpkgs

blakesweeney/official-images

blakesweeney/prelims

blakesweeney/r2dt-utils

blakesweeney/rat

blakesweeney/residue-ordering

blakesweeney/rfutil

blakesweeney/rkv

blakesweeney/rnc-utils

blakesweeney/sub

blakesweeney/superposition

blakesweeney/VimCompletesMe