Blekhman Lab

Microbiome research at the University of Chicago

United States of America

Pinned Repositories

biomehorizon
Plot microbiome time series in parallel
Language:R24 1 82
biorxiv_countries
Code repository for "International authorship and collaboration in bioRxiv preprints"
Language:TSQL0 2 01
docker_dada2
Docker convenience image containing R and the DADA2 package (plus dependencies), used for processing amplicon data.
Language:Dockerfile0 1 12
hominid
Hominid: host-microbiome interaction identification
Language:Python16 2 33
host_gene_microbiome_interactions
Analysis framework for integrating gut microbiome and host gene expression data
Language:R31 2 312
milk_infant_microbiome
Project on breast milk and infant gut microbiome
0 0 01
panlingua
Multilingual preprint search tool for bioRxiv
Language:Python1 2 10
rxivist
API providing access to papers and authors scraped from biorxiv.org
Language:Python59 4 24711
rxivist_spider_biorxiv
Web crawler that indexes preprints posted to bioRxiv.org and medRxiv.org.
Language:Python1 1 01
rxivist_web
Web application for Rxivist, the site that makes it easier to find the most talked-about papers on bioRxiv.org
Language:Smarty10 4 354

Blekhman Lab's Repositories

blekhmanlab/rxivist
API providing access to papers and authors scraped from biorxiv.org
Language:Python59 4 24711
blekhmanlab/host_gene_microbiome_interactions
Analysis framework for integrating gut microbiome and host gene expression data
Language:R31 2 312
blekhmanlab/biomehorizon
Plot microbiome time series in parallel
Language:R24 1 82
blekhmanlab/hominid
Hominid: host-microbiome interaction identification
Language:Python16 2 33
blekhmanlab/rxivist_web
Web application for Rxivist, the site that makes it easier to find the most talked-about papers on bioRxiv.org
Language:Smarty10 4 354
blekhmanlab/panlingua
Multilingual preprint search tool for bioRxiv
Language:Python1 2 10
blekhmanlab/rxivist_spider_biorxiv
Web crawler that indexes preprints posted to bioRxiv.org and medRxiv.org.
Language:Python1 1 01
blekhmanlab/biorxiv_countries
Code repository for "International authorship and collaboration in bioRxiv preprints"
Language:TSQL0 2 01
blekhmanlab/compendium
Metadata ingest service
Language:Python0 1 161
blekhmanlab/compendium_website
Website for the Human Microbiome Compendium
Language:TypeScript0 3 221
blekhmanlab/docker_dada2
Docker convenience image containing R and the DADA2 package (plus dependencies), used for processing amplicon data.
Language:Dockerfile0 1 12
blekhmanlab/milk_infant_microbiome
Project on breast milk and infant gut microbiome
0 0 01
blekhmanlab/Primates
This repository contains scripts related to the publication "Interspecies variation in hominid gut microbiota controls host gene regulation."
Language:R0 0 00
blekhmanlab/snakemake-template
Quickstart for building out a new snakemake pipeline
Language:Python0 0 10
blekhmanlab/universal_microbiome_h2
Files and R script for Gut microbiome heritability is near-universal but environmentally contingent
Language:R0 2 02
blekhmanlab/compendium_v1
Code associated with the first publication describing the Human Microbiome Compendium
Language:R1 0
blekhmanlab/snakemake-compendium
Human Microbiome Compendium processing pipeline
Language:R

Blekhman Lab

Pinned Repositories

biomehorizon

biorxiv_countries

docker_dada2

hominid

host_gene_microbiome_interactions

milk_infant_microbiome

panlingua

rxivist

rxivist_spider_biorxiv

rxivist_web

Blekhman Lab's Repositories

blekhmanlab/rxivist

blekhmanlab/host_gene_microbiome_interactions

blekhmanlab/biomehorizon

blekhmanlab/hominid

blekhmanlab/rxivist_web

blekhmanlab/panlingua

blekhmanlab/rxivist_spider_biorxiv

blekhmanlab/biorxiv_countries

blekhmanlab/compendium

blekhmanlab/compendium_website

blekhmanlab/docker_dada2

blekhmanlab/milk_infant_microbiome

blekhmanlab/Primates

blekhmanlab/snakemake-template

blekhmanlab/universal_microbiome_h2

blekhmanlab/compendium_v1

blekhmanlab/snakemake-compendium