blekhmanlab/compendium

Issues

• Reformat as hub for public development

  #15 opened 4 months ago by rabdill
  0

• Accommodate situations where some prefetch jobs fail

  #5 opened 2 years ago by rabdill
  3

• Manager doesn't detect when pipeline errors crashed snakemake

  #14 opened 2 years ago by rabdill
  0

• Fetch projects to process automatically

  #6 opened 2 years ago by rabdill
  0

• Determine how many projects are currently running

  #7 opened 2 years ago by rabdill
  0

• Add ability to restart a failed project with `matchids` option

  #12 opened 2 years ago by rabdill
  0

• Add ability to restart a failed project as single-end

  #13 opened 2 years ago by rabdill
  0

• Ingest ASV table results

  #2 opened 2 years ago by rabdill
  1

• Collect monitoring information across many snakemake jobs

  #3 opened 2 years ago by rabdill
  1

• Automatic submission of projects miscounts restarted projects

  #11 opened 2 years ago by rabdill
  0

• When user requests project status, it should include info from DB

  #10 opened 2 years ago by rabdill
  0

• Checking status of re-run jobs overestimates progress

  #9 opened 2 years ago by rabdill
  0

• Restructure project

  #8 opened 2 years ago by rabdill
  0

• Add testing

  #4 opened 2 years ago by rabdill
  0

• Convert to CLI tool

  #1 opened 2 years ago by rabdill
  0