bleuknight
Research emphasis on neuroinformatics- a nascent field that applies data-driven approaches from computational biology to the analysis of the brain.
New Mexico State UniversityLas Cruces, NM
bleuknight's Stars
ActiveInferenceInstitute/ActiveInferAnts
Active Inference models of/for Ants
minimaxir/reddit-graph
Jupyter notebook + Code for reproducing Reddit Subreddit graphs
samgriesemer/community-detection
final project analysis of network data
sashank06/ICWSM_Emoji
I stand with you: Using Emojis to study solidarity in crisis events(http://ceur-ws.org/Vol-2130/paper1.pdf)
lyons7/emojidictionary
A dictionary of emojis with prose names of emojis, UTF-8 codepoints, UTF-8 representations and corresponding R encodings to enable identification of emojis in mined social media data!
lingjzhu/reddit_network
Code for The structure of online social networks modulates the rate of lexical change
williamleif/redditnetwork
Tools for accessing/processing Reddit data and constructing networks based on this data. (Not an API crawler.)
jcpeterson/openwebtext
Open clone of OpenAI's unreleased WebText dataset scraper. This version uses pushshift.io files instead of the API for speed.
cs-fedy/reddit-crawler
I'm crawling reddit website, and i want to store them in a database(postgresql maybe).
fdrennan/redditsuite
A package to pull Reddit data and store it in PostgreSQL.
alumbreras/reddit_parser
Parses a json file of reddit comments and dump it to a MySQL database
nhtran93/kolam_signaling
jasonwebb/morphogenesis-resources
Resources on the topic of digital morphogenesis (creating form with code). Includes links to major articles, code repos, creative projects, books, software, and more.
sztal/pybdm
Python implementation of block decomposition method for approximating algorithmic complexity
tiangolo/uwsgi-nginx-flask-docker
Docker image with uWSGI and Nginx for Flask applications in Python running in a single container.
pgriess/pyblast
Run NCBI BLAST with an easy-to-use Pythonic wrapper
leriomaggio/deep-learning-keras-tensorflow
Introduction to Deep Neural Networks with Keras and Tensorflow
cruvadom/Convolutional-RNN
TensorFlow code for the paper Convolutional RNN: an Enhanced Model for Extracting Features from Sequential Data (https://arxiv.org/abs/1602.05875)
pb-jchin/VariantNET
A simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference
hklarner/pyboolnet
PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
mar-esther23/boolnet-perturb
Robustness and Plasticity in Regulatory Networks. The BoolNetPerturb package adds functions to BoolNet for perturbing Boolean Regulatory Networks. This functions can be used for the study of biological systems. This package is capable of labeling states, simulating multiple knock-outs and over-expressions and simulating fixed and transient perturbations in the states and trajectory of a network. See the Jupyter Tutorials for more examples.
jgtz/StableMotifs
Java library that implements the attractor finding method described in Chaos 23 (2) 025111, and the control method described in https://doi.org/10.1371/journal.pcbi.1004193
jgtz/BooleanDynamicModeling
Java library to simulate Boolean Dynamic models
jackxiaogan/Multi-level_motif_algorithm
varnivey/ipanda
insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis method that aids interpretation of large-scale gene expression data. The method introduced here includes coexpression analysis and gene importance estimation to robustly identify relevant pathways and biomarkers for patient stratification.
clbarnes/hiveplotter
A python library for creating hive plots from networkx graphs
ericmjl/hiveplot
Hive Plots in using Python & matplotlib!
ericmjl/Network-Analysis-Made-Simple
An introduction to network analysis and applied graph theory using Python and NetworkX
aloctavodia/Statistical-Rethinking-with-Python-and-PyMC3
Python/PyMC3 port of the examples in " Statistical Rethinking A Bayesian Course with Examples in R and Stan" by Richard McElreath
waldronlab/Statistical-Rethinking
An interactive online reading of McElreath's Statistical Rethinking