Pinned Repositories
bayes_parameter_estimation_for_blog
Storage repo for jupyter notebook and data file for Bayesian parameter estimation blog post at brycesrandomwalk.com
Bayesian-Modelling-in-Python
A python tutorial on bayesian modeling techniques (PyMC3)
blog4_notebook_resampling
notebook and dataset for Bryce's Random Walk blog 4 on resampling methods
blog5_notebook_language_processing
container for notebook on natural language processing and web-scraping for blog 5
blueface
A minimalist Jekyll theme.
bmanubay.github.io
bmanubay.github.io_deprecated
:triangular_ruler: A flexible two-column Jekyll theme. Perfect for personal sites, blogs, and portfolios hosted on GitHub or your own server.
Bryces-prelim-exam
Git repo for me to organize my candidacy exam materials
Doing_bayesian_data_analysis
Python/PyMC3 versions of the programs described in Doing bayesian data analysis by John K. Kruschke
MultiFidelity_Bayes
Manuscript for first EAGER grant paper on Bayesian inference driven force field parameterization using a multi-fidelity likelihood calculation algorithm
bmanubay's Repositories
bmanubay/Doing_bayesian_data_analysis
Python/PyMC3 versions of the programs described in Doing bayesian data analysis by John K. Kruschke
bmanubay/open-forcefield-group
For discussing and aggregating data for force field development
bmanubay/open-forcefield-parameters
Open, versioned forcefield parameter sets
bmanubay/openmm
OpenMM is a toolkit for molecular simulation using high performance GPU code.
bmanubay/Physics
Physics lectures by Prof. Walter Lewin
bmanubay/pymbar
Python implementation of the multistate Bennett acceptance ratio (MBAR)
bmanubay/SolvationToolkit
In-house tools for setting up arbitrary (currently non-water) solute-solvent mixtures for simulation in GROMACS
bmanubay/thermopyl
Tools for ThermoML parsing