Pinned Repositories
admixr
An R package for reproducible and automated ADMIXTOOLS analyses
adventofcode2021
🎄 Advent of Code 2021 in R 🎄
archaic-ychr
Repository of code for the paper "The evolutionary history of Neandertal and Denisovan Y chromosomes" by Petr et al.
bam-caller
A simple Python CLI program for calling pseudo-haploid genotypes from BAM files
demografr
Fast and simple simulation-based population genetic inference in R
ku-popgen2022
Lecture notes and materials on simulations for the 2022 popgen course at Copenhagen University
ku-popgen2023
Lecture notes and materials on simulations for the 2023 popgen course at Copenhagen University
nea-over-time
Source code and Jupyter notebooks for the paper: "The limits of long-term selection against Neandertal introgression"
slendr
Population genetic simulations in R 🌍
vcf2eigenstrat
A simple shell script for VCF -> EIGENSTRAT conversion
bodkan's Repositories
bodkan/slendr
Population genetic simulations in R 🌍
bodkan/admixr
An R package for reproducible and automated ADMIXTOOLS analyses
bodkan/demografr
Fast and simple simulation-based population genetic inference in R
bodkan/archaic-ychr
Repository of code for the paper "The evolutionary history of Neandertal and Denisovan Y chromosomes" by Petr et al.
bodkan/ku-popgen2022
Lecture notes and materials on simulations for the 2022 popgen course at Copenhagen University
bodkan/nea-over-time
Source code and Jupyter notebooks for the paper: "The limits of long-term selection against Neandertal introgression"
bodkan/vcf2eigenstrat
A simple shell script for VCF -> EIGENSTRAT conversion
bodkan/adventofcode2021
🎄 Advent of Code 2021 in R 🎄
bodkan/bam-caller
A simple Python CLI program for calling pseudo-haploid genotypes from BAM files
bodkan/ku-popgen2023
Lecture notes and materials on simulations for the 2023 popgen course at Copenhagen University
bodkan/mpieva-slendr-2023
Gentle introduction to population genetic simulations at MPI EVA (2023)
bodkan/probgen2022
Interactive code examples from the ProbGen 2022 slendr poster
bodkan/slimr
R package for parsing, processing and analysing SLiM output files.
bodkan/smbe2021
Companion repository for the SMBE 2021 poster "A framework for simulating spatio-temporal population genomic data on a real geographic landscape"
bodkan/admixr-workshop
bodkan/arch-finder
Scan archaic and modern human genomes to get a list of putatively introgressed alleles
bodkan/bdkn
A set of personal convenience R functions
bodkan/beluga-simulations
bodkan/bodkan
bodkan/bodkan.github.io
bodkan/demography
bodkan/dotfiles
Personal collection of configuration files I'm using across various machines (my Macbook Pro, GNU/Linux remote nodes and containers)
bodkan/globe-slendr-2023-03-22
Simulation workshop for the Globe Institute, University of Copenhagen
bodkan/hg19-bvalues
Conversion of McVicker et al. B value coordinates to hg19
bodkan/introgression-sims
bodkan/ku-introgression2024
bodkan/notebooks
A random collection of exploratory Jupyter notebooks.
bodkan/spatial-selection
bodkan/st-locator
bodkan/tskit
Analyse, create and manipulate tree sequences.