Pinned Repositories
clSpMV_MIC
A MIC-based implementation of the clSpMV code (http://www.eecs.berkeley.edu/~subrian/clSpMV.html). Includes many improvements like generalizations to templates.
CMakeUtilities
A collection of CMake modules and examples I have sitting around.
dotfiles
Dotfiles to config my environment in various settings
LatexTemplates
Some of my personal templates for creating latex documents. Includes my own style for beamer slides.
rbffd_gpu
Radial Basis Function Finite Differences on the GPU
rbffd_gpu_scripts
Scripts (mostly matlab post processing) for the rbffd_gpu and other projects.
rbffd_prototypes
Prototypes Written in Matlab and Mathematica for the RBFFD_GPU Project
tributary
rapid prototyping with d3.js
viennacl
NOTE: this is outdated. Please follow this repo instead: https://github.com/viennacl/viennacl-dev . Fork of the ViennaCL Project from Sourceforge (upstream: git://viennacl.git.sourceforge.net/gitroot/viennacl/viennacl). Fork/Clone this easily within GitHub. I will attempt to keep master updated regularly from upstream. My own modifications will be in the multi-gpu branch.
bollig's Repositories
bollig/aws-cfn-templates
AWS CloudFormation Templates Samples
bollig/aws-deployment-guide
Seamlessly deploy cryoSPARC in the cloud using AWS CloudFormation and AWS ParallelCluster.
bollig/aws-genomics-workflows
Genomics Workflows on AWS
bollig/aws-parallelcluster
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.
bollig/aws-parallelcluster-cost-allocation-tags
bollig/aws-parallelcluster-monitoring
Monitoring Dashboard for AWS ParallelCluster
bollig/CMAQ
Code base for the U.S. EPA’s Community Multiscale Air Quality Model (CMAQ). For additional background on CMAQ please visit: www.epa.gov/CMAQ
bollig/cryoem-on-aws-parallel-cluster
This GitHub repository contains resources to deploy the solution described in the HPC Blog for CryoSparc on AWS ParallelCLuster
bollig/e4s
E4S Spack environments and container recipes
bollig/eksctl
The official CLI for Amazon EKS
bollig/emr_notebooks_example
An example notebook for AWS EMR Notebooks. The example processes MovieLens data stored in an S3 bucket as an example.
bollig/gitlab-runners
Images used to run Gitlab pipelines in the cloud
bollig/glance
The Glance project provides services for discovering, registering, and retrieving virtual machine images. Glance has a RESTful API that allows querying of VM image metadata as well as retrieval of the actual image.
bollig/grafana-gnocchi-datasource
Grafana (3.x) Gnocchi datasource
bollig/horizon
Horizon is a Django-based project aimed at providing a complete OpenStack Dashboard along with an extensible framework for building new dashboards from reusable components.
bollig/landing-zone-accelerator-on-aws
Deploy a multi-account cloud foundation to support highly-regulated workloads and complex compliance requirements.
bollig/matlab-on-aws
Stand up a MATLAB desktop with Remote Desktop access using AWS CloudFormation
bollig/open-data-registry
A registry of publicly available datasets on AWS
bollig/pcluster-manager
Manage AWS ParallelCluster through an easy to use web interface
bollig/pscf
Polymer self-consistent field theory
bollig/puppet-aodh
OpenStack Aodh Puppet Module
bollig/puppet-nova
OpenStack Nova Puppet Module
bollig/puppetlabs-openstack
Puppet Labs Reference and Testing Deployment Module for OpenStack (master tracks Mitaka)
bollig/quickstart-illumina-dragen
AWS Quick Start Team
bollig/relion
Image-processing software for cryo-electron microscopy
bollig/service-workbench-on-aws
A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enabling university IT stakeholders to manage, monitor, and control spending, apply security best practices, and comply with corporate governance.
bollig/spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
bollig/tso_cnv
Copy number variation detection for TruSightOne capture
bollig/Tychus
bollig/underworld2
underworld2: A parallel, particle-in-cell, finite element code for Geodynamics.