Pinned Repositories
collegetables
Making a website to help my kids with their college search.
ComparativeMethodsInR
A book for teaching people how to do comparative methods in R
cv
CV done with R, markdown, and pandoc
phrapl
phydo
Project to quickly provide an overview of a clade, as a starting point for human-driven analysis.
phylometh
Repo for code, problems, text, and other info for the PhyloMeth course in phylogenetic methods
purpleairpy
Python library to pull in information from Purpleair sensors
ReturnOfTheMinivan
Data for response to Donoghue and Edward's response to Beaulieu and O'Meara. We have more cupholders, and they come filled with data! [And cheerios]
datelife
R package containing datelife's core functionality
corHMM
Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as “hidden” states in a Markov process.
bomeara's Repositories
bomeara/dentist
R package to sample points around a specified distance from the maximum likelihood estimates. This should be a better way to estimate uncertainty than using the Hessian of the likelihood equation. It works by "denting" the likelihood surface to make a ridge at your desired ∆lnL and then "walks" around this dented surface, sampling points.
bomeara/collegetables_source
Source code for collegetables.info website
bomeara/omiphy
utility functions for phylogenetics, networks, and related
bomeara/PhylogeneticsTaskView
Draft of a resurrected task view for phylogenetics in R
bomeara/hyperr8
Fix hyperbolic rate estimates
bomeara/scheduleR
R package for arranging meeting schedules
bomeara/phydo
Project to quickly provide an overview of a clade, as a starting point for human-driven analysis.
bomeara/applyingtoeeb
Webpage for info on applying to ecology, evolution, and related programs
bomeara/BayesianNetworks
Bayesian modelling of bipartite networks
bomeara/bipartite
repository for the bipartite R-package for network analysis
bomeara/brianomearainfo
Information for my web page
bomeara/collegetables_site
The actual site files
bomeara/collegetables_site_x2024
Latest version of the site
bomeara/collegetables_source_db
College tables, but using the relational database approach
bomeara/EastTN
bomeara/empirical_fog
Empirical fog datasets
bomeara/evo_core_charlesworth_2009
bomeara/evo_core_gould_lewontin_1979
bomeara/evo_core_junkdna
bomeara/evo_core_kokko_et_al_2017
bomeara/evolutioncodeofethics
Static repo of the code of conduct site
bomeara/geewhizPython
Demo of what python can do
bomeara/geewhizR
Intro to R for teaching
bomeara/hyperbolic_rates
Analyses used for hyperbolic rate paper
bomeara/NSFawardees
Web page to get info on how institutions handle NSF-funded people
bomeara/nursinghomecovid
Present https://data.cms.gov/covid-19/covid-19-nursing-home-data in a more accessible way
bomeara/SeekReactNative
Seek v2, built with React Native for Android and iOS
bomeara/SpiculeComplexity
bomeara/tapnet
Predict interaction frequencies of bipartite networks
bomeara/vegan
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis