phylotastic/datelife

Issues

• No species found in homo

  #86 opened a year ago by snacktavish
  3

• Do all summaries require bladj?

  #96 opened 6 months ago by snacktavish
  0

• Run bladj from calibrations

  #95 opened 6 months ago by snacktavish
  4

• OTT name search failing

  #85 opened 6 months ago by snacktavish
  1

• query fails due to unmatched names

  #93 opened 6 months ago by snacktavish
  2

• Error in phylo_median

  #94 opened 6 months ago by snacktavish
  1

• print method for chronogram database

  #92 opened 10 months ago by LunaSare
  0

• make datelife_results object

  #40 opened 10 months ago by LunaSare
  0

• warning: lazy data db without compression

  #76 opened 10 months ago by LunaSare
  1

• Documentations tweaks

  #90 opened 10 months ago by snacktavish
  2

• citation not getting rebuilt via pkgdown

  #89 opened 10 months ago by snacktavish
  0

• Relative time

  #73 opened 3 years ago by bomeara
  1

• Summarising chronograms fails

  #81 opened 2 years ago by irmoodie
  2

• Issue with DESCRIPTION prevents installation

  #70 opened 2 years ago by vsbuffalo
  1

• elephas datelife query returning 7 species instead of 8

  #80 opened 2 years ago by LunaSare
  0

• managing subspecies when making a datelife query

  #79 opened 2 years ago by LunaSare
  0

• Getting dated OpenTree induced synthetic subtree fails

  #77 opened 3 years ago by uyedaj
  1

• tnrs_match batch function fix

  #71 opened 3 years ago by LunaSare
  0

• catsanddogs_bold

  #69 opened 4 years ago by LunaSare
  0

• a solution for packages on imports that got kicked out of CRAN

  #68 opened 5 years ago by LunaSare
  2

• add some S3 methods

  #67 opened 5 years ago by LunaSare
  0

• add dating with treePL as an alternative to PATHd8

  #36 opened 5 years ago by LunaSare
  3

• tree from taxonomy reticulates and gives fatal memory error with ape::write.tree

  #66 opened 5 years ago by LunaSare
  0

• datelife testing data sets

  #65 opened 6 years ago by LunaSare
  0

• Get a TLS cert so people can connect via https

  #64 opened 6 years ago by bomeara
  0

• add dropped taxa to get_dated_otol_induced_subtree output

  #63 opened 6 years ago by LunaSare
  0

• summarize trees with hierarchical clustering method used for timetree

  #62 opened 6 years ago by LunaSare
  0

• allow tree grafting when n_overlap = 1

  #61 opened 6 years ago by LunaSare
  0

• standardize names below species level (eliminate var, subsp, etc.)

  #60 opened 6 years ago by LunaSare
  0

• Use common names

  #59 opened 6 years ago by bomeara
  0

• what happens when we have no overlapping taxa in multiple chronograms?

  #51 opened 6 years ago by LunaSare
  1

• install packages with datelife

  #46 opened 6 years ago by LunaSare
  2

• optimize get_datelife_result speed

  #58 opened 6 years ago by LunaSare
  0

• datelifeweb page seems to be using an old datelife version

  #54 opened 6 years ago by LunaSare
  2

• webpage need some improvements

  #55 opened 6 years ago by LunaSare
  1

• enable higher-taxon search on web page

  #56 opened 6 years ago by LunaSare
  1

• topology change induced by median scaling

  #57 opened 6 years ago by arlin
  1

• test that tree_fix_brlen with mrbayes works with large trees

  #53 opened 6 years ago by LunaSare
  0

• profile sdm

  #52 opened 6 years ago by LunaSare
  0

• using hclust with mean linkage clustering

  #50 opened 6 years ago by LunaSare
  1

• query of >250 spp names not supported by rotl::tnrs_match_names fn

  #39 opened 6 years ago by LunaSare
  1

• adopt ropensci style for datelife

  #41 opened 6 years ago by LunaSare
  1

• Convert rphylotastic fns to match new names

  #43 opened 6 years ago by bomeara
  1

• in studies with several trees from the same group, identify the tree with median depth

  #49 opened 6 years ago by LunaSare
  0

• identify units in return value of scaling service

  #48 opened 7 years ago by arlin
  0

• install mrBayes with datelife

  #38 opened 7 years ago by LunaSare
  1

• Export total time in tree

  #45 opened 7 years ago by bomeara
  0

• Recommend tree

  #44 opened 7 years ago by bomeara
  0

• Fix negative branch lengths inside GetBoldOToLTree function

  #42 opened 7 years ago by LunaSare
  0

• allow different dating methods in GetBoldOToLTree function

  #37 opened 7 years ago by LunaSare
  0