Pinned Repositories
3D-tools
A set of tools for dealing with point clouds representing a forest. Basic object recognition and extraction, calculation of spatial and spectral attributes, automation of data processing, etc.
Color_correction
A python module that color correct images, by automatically detecting color card in input images
forestUtils
Tools for 3D rendering of forest. New version of 3D-tools; name changed so it doesn't start with a number
GBSFilteR
R scripts to filter Genotyping by Sequencing data from the TASSEL pipeline
Gigavision
A modular system for acquiring images from cameras on a schedule
spc-eyepi
Raspberry PI DSLR control code
SpectralPhenoClimatron-imaging
Image analysis code for the SpectralPhenoClimatron
timeplayer-9000
HTML5 timelapse player
timestreamlib
DEPRECATED. Please use the current version of the TimeStream tools at https://gitlab.com/appf-anu/pyts2.
traitcapture-bin
Programs, scripts, etc. forming part of the TraitCapture Genotype-Phenotype-Environment analysis suite
Borevitz Laboratory's Repositories
borevitzlab/timestreamlib
DEPRECATED. Please use the current version of the TimeStream tools at https://gitlab.com/appf-anu/pyts2.
borevitzlab/GBSFilteR
R scripts to filter Genotyping by Sequencing data from the TASSEL pipeline
borevitzlab/timeplayer-9000
HTML5 timelapse player
borevitzlab/DEM-o-matic
Creates synthetic digital elevation models (DEMs) from point data.
borevitzlab/Gigavision
A modular system for acquiring images from cameras on a schedule
borevitzlab/exif2timestream
DEPRECATED. Please use the current version of the TimeStream tools at https://gitlab.com/appf-anu/pyts2.
borevitzlab/fieldwork-sampling-tools
Fieldwork and plant sampling management helpers
borevitzlab/gwas-code
borevitzlab/py-eyepi
tool to capture images from dslrs and raspberry pi cameras
borevitzlab/EucsNSW-ET
borevitzlab/pysolarcalc
A python port of SolarCalc by Kurt Spokas. NOW LIVES AT GITLAB: https://gitlab.com/appf-anu/pysolarcalc/
borevitzlab/alleucmeta
borevitzlab/bgi-LB-emel
borevitzlab/BMP280-sensor-housing
3D printed housing for the BME/BMP280 temperature/humidity/pressure sensor
borevitzlab/borevitzlab.github.io
borevitzlab/brachy-genotyping
borevitzlab/cca-eucs
borevitzlab/Euc-BarcodeReader
its lit
borevitzlab/euc-sampling-helpers
borevitzlab/exif2timestream-v2
DEPRECATED. Please use the current version of the TimeStream tools at https://gitlab.com/appf-anu/pyts2.
borevitzlab/LandscapeModelling
borevitzlab/ls2ncdu
NCDU crawler for systems which only have `ls -lR` available
borevitzlab/ming-honours-code
Assorted code for reproducing results in Ming's honours 2018 project
borevitzlab/paneuc-scripts
pangenome project assemblies
borevitzlab/quickaudit
Does a quick audit of images
borevitzlab/rpi-18mp-cam-enclosure
Enclosure for the e-con 13-mp camera
borevitzlab/rpi-chamber-cases
Models for Raspberry Pi cases in growth chambers
borevitzlab/seed_holepunch
3D printable for making seed slots in substrate.
borevitzlab/shell-genomics
borevitzlab/timestreamCLI
DEPRECATED. Please use the current version of the TimeStream tools at https://gitlab.com/appf-anu/pyts2.