This GWAS code enables time-series GWAS analysis of plant phenotype data outputs from the TraitCapture pipeline (see [TraitCapture.org/resources]) An example dataset of an experiment (BVZ0073) is included in the current release.
Code was written by Riyan Cheng (ric025@ucsd.edu) for Justin Borevitz and the Borevitz Lab as part of the TraitCapture Linkage grant.
Funding provided by the Australian Research Council and the Australian National University
If you use our code, please let us know and include a reference to: Brown, Tim B., Riyan Cheng, Xavier R RSirault, Tepsuda Rungrat, Kevin D Murray, Martin Trtilek, Robert T Furbank, Murray Badger, Barry J Pogson, Justin O Borevitz. TraitCapture: genomic and environment modelling of plant phenomic data. (2014). Current opinion in plant biology 18 (2014): 73-79. https://doi.org/10.1016/j.pbi.2014.02.002.
Contact: Web: http://Borevitzlab.anu.edu.au Please contact us via github or the Borevitz Lab website if you have questions or comments.