WangLab @ U of T

BoWang's Lab at University of Toronto

190 Elizabeth St, Toronto, ON M5G 2C4 Canada

Pinned Repositories

BIONIC
Biological Network Integration using Convolutions
Language:Python58 5 244
BLEEP
Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
Language:Python51 5 89
clinical-camel
Language:Python48 9 64
DeepVelo
Language:Python36 7 76
Graph-Mamba
Graph-Mamba: Towards Long-Range Graph Sequence Modelling with Selective State Spaces
Language:Python171 5 421
joint-ner-and-re
This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "End-to-end Named Entity Recognition and Relation Extraction using Pre-trained Language Models".
Language:Jupyter Notebook90 13 514
MedSAM
Segment Anything in Medical Images
Language:Jupyter Notebook2.4k 17 238320
MedSAMSlicer
3D Slicer Plugin for Segment anything in medical images
Language:Python97 5 2414
scGPT
Language:Jupyter Notebook919 36 189167
U-Mamba
U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation
Language:Python562 11 4743

WangLab @ U of T's Repositories

bowang-lab/MedSAM
Segment Anything in Medical Images
Language:Jupyter Notebook2.4k 17 238320
bowang-lab/scGPT
Language:Jupyter Notebook919 36 189167
bowang-lab/U-Mamba
U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation
Language:Python562 11 4743
bowang-lab/Graph-Mamba
Graph-Mamba: Towards Long-Range Graph Sequence Modelling with Selective State Spaces
Language:Python171 5 421
bowang-lab/MedSAMSlicer
3D Slicer Plugin for Segment anything in medical images
Language:Python97 5 2414
bowang-lab/BIONIC
Biological Network Integration using Convolutions
Language:Python58 5 244
bowang-lab/BLEEP
Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
Language:Python51 5 89
bowang-lab/clinical-camel
Language:Python48 9 64
bowang-lab/DeepVelo
Language:Python36 7 76
bowang-lab/AGILE
AGILE Platform: A Deep Learning-Powered Approach to Accelerate LNP Development for mRNA Delivery
Language:Python21 6 153
bowang-lab/MEDIQA-Chat-2023
A repository for organizing our submission to the MEDIQA-Chat Tasks @ ACL-ClinicalNLP 2023
Language:Python19 7 97
bowang-lab/OCAT
Language:Python17 3 33
bowang-lab/scFormer
Language:Python17 6 113
bowang-lab/DPM-MedImgEnhance
Pre-trained Diffusion Models for Plug-and-Play Medical Image Enhancement
Language:Python16 4 12
bowang-lab/MAESTER
Masked Autoencoder Guided Segmentation at Pixel Resolution
Language:Python12 4 16
bowang-lab/CONCERTO
Carcinogenicity prediction with graph neural networks
Language:Jupyter Notebook10 6 13
bowang-lab/LabChat
Language:Jupyter Notebook9 4 01
bowang-lab/NanoMASK
mouse pet-ct image segmentation
Language:Python8 4 01
bowang-lab/CellSeg-Transformers
Language:Python6
bowang-lab/IntegrAO
Integrate Any Omics: Towards genome-wide data integration for patient stratification
Language:Jupyter Notebook6 3 02
bowang-lab/CongFu
CongFu: Conditional Graph Fusion for Drug Synergy Prediction
Language:Python5 4 23
bowang-lab/SIMLR_PY
Python version of SIMLR
Language:Python3 2 00
bowang-lab/genomic-FM
Language:Python2 4 51
bowang-lab/unicell
Universal cellular segmentation models
Language:Python2 4 0
bowang-lab/rOCAT
Language:R1 4 01
bowang-lab/ViST-Echo
PD's thesis work towards a Video Swin Transformer for echocardiographic data.
Language:Python1 4 0
bowang-lab/scHash
Language:Jupyter Notebook0 4 02
bowang-lab/evlp_xray_vision
Computer vision models for EVLP lung X-ray images.
Language:Python
bowang-lab/InsighTx
An Extreme Gradient Boosting (XGBoost) model using ex vivo lung perfusion data to classify lung transplant outcomes
Language:Python4 0
bowang-lab/SAUNet_HCM_segmentation
SAUNet model implementation for cardiovascular medical image segmentation
Language:Python3 0