boxiangliu
Asst. Prof. @NUS, ex-Staff Research Scientist @Baidu, bioinformatics Ph.D. @Stanford. Working in the intersection between AI/ML and biology/medicine.
National University of SingaporeSingapore
Pinned Repositories
ANTseq
Cheap Ancestry Determination with Targeted Sequencing
covseq
CoV-Seq: COVID-19 Genomic Sequence Database and Visualization
enformer
Forked from https://github.com/deepmind/deepmind-research/
enformer-pytorch
hcasmc_eqtl
locuscompare
LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
locuscomparer
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
manhattan
ggplot2-based Manhattan plot
ParaMed
Chinese to English medical translation
rpe
The RPE project
boxiangliu's Repositories
boxiangliu/locuscomparer
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
boxiangliu/ParaMed
Chinese to English medical translation
boxiangliu/locuscompare
LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
boxiangliu/enformer-pytorch
boxiangliu/manhattan
ggplot2-based Manhattan plot
boxiangliu/enformer
Forked from https://github.com/deepmind/deepmind-research/
boxiangliu/spliceAI-pytorch
Pytorch implementation of spliceAI
boxiangliu/Intro-to-Genomics
Course material for "BIOS 201: Next-generation sequencing and applications"
boxiangliu/Pangolin
Pangolin is a deep-learning method for predicting splice site strengths.
boxiangliu/sim_anneal
Simulated annealing for codon optimization
boxiangliu/abbrev
boxiangliu/alphafold
Open source code for AlphaFold.
boxiangliu/boxiangliu.github.io
Boxiang's academic website
boxiangliu/cpi_contact
Compound Protein Contact Prediction
boxiangliu/DLEPS
A Deep Learning based Efficacy Prediction System for drug discovery
boxiangliu/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
boxiangliu/fairseq
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
boxiangliu/GRaSP
boxiangliu/idr-notebooks
Jupyter Notebooks for the Image Data Resource
boxiangliu/Markov-Random-Field-Project
This project has two parts. In part one, we use markov random field to denoise an image. In Part two, we use similar model for image segmentation.
boxiangliu/mutational-semantics-neurips2020
Learning mutational semantics
boxiangliu/onek1k_phase1
Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
boxiangliu/pytorch-lr-finder
A learning rate range test implementation in PyTorch
boxiangliu/pytorch-seq2seq
Tutorials on implementing a few sequence-to-sequence (seq2seq) models with PyTorch and TorchText.
boxiangliu/pytorch_lightning_mnist
MNIST model in Pytorch lightning
boxiangliu/span-parser-pytorch
boxiangliu/SpliZ
Nextflow implementation of SpliZ
boxiangliu/SyntacticPointer
boxiangliu/tape
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
boxiangliu/trRosetta
A package to predict protein inter-residue geometries from sequence data